4fyp: Difference between revisions
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== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[4fyp]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4FYP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4FYP FirstGlance]. <br> | <table><tr><td colspan='2'>[[4fyp]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4FYP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4FYP FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></tr> | ||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4fyp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4fyp OCA], [https://pdbe.org/4fyp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4fyp RCSB], [https://www.ebi.ac.uk/pdbsum/4fyp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4fyp ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4fyp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4fyp OCA], [https://pdbe.org/4fyp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4fyp RCSB], [https://www.ebi.ac.uk/pdbsum/4fyp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4fyp ProSAT]</span></td></tr> | ||
</table> | </table> | ||
Latest revision as of 13:01, 30 October 2024
Crystal Structure of Plant Vegetative Storage ProteinCrystal Structure of Plant Vegetative Storage Protein
Structural highlights
FunctionVSP1_ARATH May function as somatic storage protein during early seedling development (By similarity). Publication Abstract from PubMedArabidopsis thaliana vegetative storage proteins, VSP1 and VSP2, are acid phosphatases and belong to the haloacid dehalogenase (HAD) superfamily. In addition to their potential nutrient storage function, they were thought to be involved in plant defense and flower development. To gain insights into the architecture of the protein and obtain clues about its function, we have tested their substrate specificity and solved the structure of VSP1. The acid phosphatase activities of these two enzymes require divalent metal such as magnesium ion. Conversely, the activity of these two enzymes is inhibited by vanadate and molybdate, but is resistant to inorganic phosphate. Both VSP1 and VSP2 did not exhibit remarkable activities to any physiological substrates tested. In the current study, we presented the crystal structure of recombinant VSP1 at 1.8 A resolution via the selenomethionine single-wavelength anomalous diffraction (SAD). Specifically, an alpha-helical cap domain on the top of the alpha/beta core domain is found to be involved in dimerization. In addition, despite of the low sequence similarity between VSP1 and other HAD enzymes, the core domain of VSP1 containing conserved active site and catalytic machinery displays a classic haloacid dehalogenase fold. Furthermore, we found that VSP1 is distinguished from bacterial class C acid phosphatase P4 by several structural features. To our knowledge, this is the first study to reveal the crystal structure of plant vegetative storage proteins. The crystal structure of Arabidopsis VSP1 reveals the plant class C-like phosphatase structure of the DDDD superfamily of phosphohydrolases.,Chen Y, Wei J, Wang M, Shi Z, Gong W, Zhang M PLoS One. 2012;7(11):e49421. doi: 10.1371/journal.pone.0049421. Epub 2012 Nov 14. PMID:23166664[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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