3zg7: Difference between revisions
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<StructureSection load='3zg7' size='340' side='right'caption='[[3zg7]], [[Resolution|resolution]] 1.99Å' scene=''> | <StructureSection load='3zg7' size='340' side='right'caption='[[3zg7]], [[Resolution|resolution]] 1.99Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3zg7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/ | <table><tr><td colspan='2'>[[3zg7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Listeria_monocytogenes Listeria monocytogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZG7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZG7 FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.991Å</td></tr> | ||
<tr id=' | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zg7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zg7 OCA], [https://pdbe.org/3zg7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zg7 RCSB], [https://www.ebi.ac.uk/pdbsum/3zg7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zg7 ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zg7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zg7 OCA], [https://pdbe.org/3zg7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zg7 RCSB], [https://www.ebi.ac.uk/pdbsum/3zg7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zg7 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: | [[Category: Listeria monocytogenes]] | ||
[[Category: | [[Category: Jeong JH]] | ||
[[Category: | [[Category: Kim YG]] | ||
Latest revision as of 05:38, 21 November 2024
Crystal Structure of Penicillin-Binding Protein 4 from Listeria monocytogenes in the apo formCrystal Structure of Penicillin-Binding Protein 4 from Listeria monocytogenes in the apo form
Structural highlights
Publication Abstract from PubMedPenicillin-binding proteins (PBPs), which catalyze the biosynthesis of the peptidoglycan chain of the bacterial cell wall, are the major molecular target of bacterial antibiotics. Here, we present the crystal structures of the bifunctional peptidoglycan glycosyltransferase (GT)/transpeptidase (TP) PBP4 from Listeria monocytogenes in the apo-form and covalently linked to two beta-lactam antibiotics, ampicillin and carbenicillin. The orientation of the TP domain with respect to the GT domain is distinct from that observed in the previously reported structures of bifunctional PBPs, suggesting an inter-domain flexibility. In this structure, the active site of the GT domain is occluded by the close apposition of the linker domain, which supports the hypothesis that inter-domain flexibility is related to the regulation of GT activity. The acylated structures reveal the mode of action of beta-lactam antibiotics to the class A PBP4 from the human pathogen L. monocytogenes. Ampicillin and carbenicillin can access the active site and be acylated without requiring a structural rearrangement. In addition, the active site of the TP domain in the apo-form is occupied by the tartrate molecule via extensive hydrogen bond interactions with the catalytically important residues; thus, derivatives of the tartrate molecule may be useful in the search for new antibiotics to inhibit PBPs. Crystal structures of bifunctional Penicillin-Binding Protein 4 from Listeria monocytogenes.,Jeong JH, Kim YS, Rojviriya C, Ha SC, Kang BS, Kim YG Antimicrob Agents Chemother. 2013 May 13. PMID:23669378[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
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