3qh3: Difference between revisions
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<StructureSection load='3qh3' size='340' side='right'caption='[[3qh3]], [[Resolution|resolution]] 2.19Å' scene=''> | <StructureSection load='3qh3' size='340' side='right'caption='[[3qh3]], [[Resolution|resolution]] 2.19Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3qh3]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/ | <table><tr><td colspan='2'>[[3qh3]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QH3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QH3 FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.19Å</td></tr> | ||
<tr id=' | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qh3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qh3 OCA], [https://pdbe.org/3qh3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qh3 RCSB], [https://www.ebi.ac.uk/pdbsum/3qh3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qh3 ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qh3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qh3 OCA], [https://pdbe.org/3qh3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qh3 RCSB], [https://www.ebi.ac.uk/pdbsum/3qh3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qh3 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Homo sapiens]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Baker | [[Category: Baker BM]] | ||
[[Category: Borbulevych | [[Category: Borbulevych OY]] | ||
Latest revision as of 05:18, 21 November 2024
The crystal structure of TCR A6The crystal structure of TCR A6
Structural highlights
Publication Abstract from PubMedalphabeta T-cell receptors (TCRs) recognize multiple antigenic peptides bound and presented by major histocompatibility complex molecules. TCR cross-reactivity has been attributed in part to the flexibility of TCR complementarity-determining region (CDR) loops, yet there have been limited direct studies of loop dynamics to determine the extent of its role. Here we studied the flexibility of the binding loops of the alphabeta TCR A6 using crystallographic, spectroscopic, and computational methods. A significant role for flexibility in binding and cross-reactivity was indicated only for the CDR3alpha and CDR3beta hypervariable loops. Examination of the energy landscapes of these two loops indicated that CDR3beta possesses a broad, smooth energy landscape, leading to rapid sampling in the free TCR of a range of conformations compatible with different ligands. The landscape for CDR3alpha is more rugged, resulting in more limited conformational sampling that leads to specificity for a reduced set of peptides as well as the major histocompatibility complex protein. In addition to informing on the mechanisms of cross-reactivity and specificity, the energy landscapes of the two loops indicate a complex mechanism for TCR binding, incorporating elements of both conformational selection and induced fit in a manner that blends features of popular models for TCR recognition. Disparate degrees of hypervariable loop flexibility control T-cell receptor cross-reactivity, specificity, and binding mechanism.,Scott DR, Borbulevych OY, Piepenbrink KH, Corcelli SA, Baker BM J Mol Biol. 2011 Dec 2;414(3):385-400. Epub 2011 Oct 12. PMID:22019736[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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