Sandbox Reserved 1703: Difference between revisions
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=Metabotropic Glutamate Receptor 2= | |||
<StructureSection load='' size='350' frame='true' side='right' caption='Fully Active mGlu2 with G-Protein Bound (PDB: [[7mts]])' scene='90/904307/Main_active_image/2'> | <StructureSection load='' size='350' frame='true' side='right' caption='Fully Active mGlu2 with G-Protein Bound (PDB: [[7mts]])' scene='90/904307/Main_active_image/2'> | ||
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===PAM and NAM Bound Form=== | ===PAM and NAM Bound Form=== | ||
Moving from the intermediate state, a second glutamate will bind in the other lobe of the VFT. This will help close the VFT and move the CRD closer together <ref name="Seven" />. A positive allosteric modulator (PAM) or a negative allosteric modulator (NAM) will then come in and bind to mGlu2. PAM and NAM induce different conformational changes, which result in different outcomes. <scene name='90/904308/Pam/4'>PAM binds</scene> the TMD and promotes greater affinity for the binding of the G-protein. There are different types of PAMs that can bind to the TMD but this page focuses on JNJ-40411813<ref name="Lin"/>. PAM binds in a binding pocket that is created by helices 3, 5, 6, and 7 in the <scene name='90/904307/Tmd_helices/ | Moving from the intermediate state, a second glutamate will bind in the other lobe of the VFT. This will help close the VFT and move the CRD closer together <ref name="Seven" />. A positive allosteric modulator (PAM) or a negative allosteric modulator (NAM) will then come in and bind to mGlu2. PAM and NAM induce different conformational changes, which result in different outcomes. <scene name='90/904308/Pam/4'>PAM binds</scene> the TMD and promotes greater affinity for the binding of the G-protein. There are different types of PAMs that can bind to the TMD but this page focuses on JNJ-40411813<ref name="Lin"/>. PAM binds in a binding pocket that is created by helices 3, 5, 6, and 7 in the <scene name='90/904307/Tmd_helices/9'>asymmetric TM3-TM4 interface</scene> . Within helix 6, the hydrophobic binding is composed of W773, F776, L777, and F780. Due to spatial hindrance caused by the binding of PAM, helix 6 is shifted downward, causing reorientation of the TMD. This reorientation creates a cleft in the TMD for the G-protein to bind<ref name="Lin"/>. NAM, however, reduces the affinity for G protein binding. <scene name='90/904308/Nam_bound/2'>NAM binds</scene> to the same binding pocket as PAM and also interacts with residue W773, but NAM occupies the binding site a little deeper than PAM. This causes NAM to push the side chain of W773 towards helix 7, which does not form the cleft for G-protein binding<ref name="Lin"/>. | ||
[[Image:PAM binding pocket correct.png |300px|right|thumb|'''Figure 4.'''PAM binding pocket. PAM, JNJ-40411813, is shown in magenta and colored by atom type, four labelled binding helices (3, 5, 6, and 7) create the binding pocket in the 7TM region for PAM binding. PAM binding promotes G-protein activation by mGLu2.]] | [[Image:PAM binding pocket correct.png |300px|right|thumb|'''Figure 4.'''PAM binding pocket. PAM, JNJ-40411813, is shown in magenta and colored by atom type, four labelled binding helices (3, 5, 6, and 7) create the binding pocket in the 7TM region for PAM binding. PAM binding promotes G-protein activation by mGLu2.]] | ||
===Active State=== | ===Active State=== | ||
The downward shift of helix 6, caused by PAM binding, induces a reorientation of the TMD from its original TM3-TM4 asymmetric dimer interface in the inactive form to an <scene name='90/904308/Active_7_tm_transparent/1'>asymmetric TM6-TM6 interface</scene>. The downward shift of helix 6 is crucial for the receptor’s transformation from the inactive to the active form for 2 main reasons: (1) reorientation breaks key interactions in the TMD that stabilize the inactive form and (2) repositioning <scene name='90/904308/Active_structure/ | The downward shift of helix 6, caused by PAM binding, induces a reorientation of the TMD from its original TM3-TM4 asymmetric dimer interface in the inactive form to an <scene name='90/904308/Active_7_tm_transparent/1'>asymmetric TM6-TM6 interface</scene>. The downward shift of helix 6 is crucial for the receptor’s transformation from the inactive to the active form for 2 main reasons: (1) reorientation breaks key interactions in the TMD that stabilize the inactive form and (2) repositioning <scene name='90/904308/Active_structure/7'>intracellular loops</scene> of in the TMD to assist in the binding and recognitions of the <scene name='90/904308/G-protein/1'>G-Protein</scene>. The G-protein is made up of three subunits: <scene name='90/904308/Alpha_subunit/1'>α-subunit</scene>, <scene name='90/904308/Beta_subunit/1'>β-subunit</scene>, and a <scene name='90/904308/Gamma_subunit/1'>γ-subunit</scene>. | ||
====G-Protein Recognition==== | ====G-Protein Recognition==== | ||
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====G-protein Binding==== | ====G-protein Binding==== | ||
The PAM induced downward shift of helix 6 coupled with the reorientation of the transmembrane domain to a TM6-TM6 asymmetric interface, opens up a cleft on the intracellular surface of the receptor. This cleft allows a <scene name='90/904308/Hook_region/ | The PAM induced downward shift of helix 6 coupled with the reorientation of the transmembrane domain to a TM6-TM6 asymmetric interface, opens up a cleft on the intracellular surface of the receptor. This cleft allows a <scene name='90/904308/Hook_region/2'>hook-like region</scene>, from terminal 4 residues of the α-subunit of the G-protein to move in adjacent to helix 4 in the TMD. Within this interaction, <scene name='90/904308/Hook_region_recognition/2'>C351</scene> on the hook participates in hydrophobic interactions with ICL2 and helix 4. These interactions allow the C-terminal region of the G-protein α-subunit to bind in the cleft formed by ICL2 and residues on helix 4<ref name="Lin" />.The receptor is now <scene name='90/904307/Main_active_image/4'>fully active</scene> with the dimer coupled only to one G-protein. The VFT is in the closed conformation and the TMD helices are also reoriented in both monomers to form an asymmetric dimer interface. These interactions allow the G-protein to bind which causes mGlu2 to be fully active. Now that mGlu2 is active it can regulate different signaling transductions in the cell<ref name="Lin"/>. | ||
==Clinical Relevance== | ==Clinical Relevance== | ||
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[[7mtq]], mGlu2 inactive <br /> | [[7mtq]], mGlu2 inactive <br /> | ||
[[7mtr]], mGlu2 PAM bound <br /> | [[7mtr]], mGlu2 PAM bound <br /> | ||
[[7epe]], mGlu2 NAM bound <br /> | |||
[[7mts]], mGlu2 active <br /> | [[7mts]], mGlu2 active <br /> | ||