Sandbox Reserved 1703: Difference between revisions

Jump to navigation Jump to search
No edit summary
No edit summary
 
(126 intermediate revisions by the same user not shown)
Line 1: Line 1:
==Metabotropic Glutamate Receptor 2==
=Metabotropic Glutamate Receptor 2=
 
<StructureSection load='7s8l' size='350' frame='true' side='right' caption='MRGPRX2 is a specific type of GPCR. Its transmembrane domain (red) spans the phospholipid bilayer of cellular membranes and attaches to the G-protein. The G-protein consists of 3 different domains: alpha (blue), beta (magenta), and gamma (yellow). scene ='90/904305/Structure_overview/2'>


<StructureSection load='' size='350' frame='true' side='right' caption='Fully Active mGlu2 with G-Protein Bound (PDB: [[7mts]])' scene='90/904307/Main_active_image/2'>


==Introduction==
==Introduction==
Metabotropic glutamate receptors are found in the central nervous system and play a critical role in modulating cell excitability and synaptic transmission <ref name="Lin">PMID: 34135510</ref>. Glutamate is the main neurotransmitter in the brain and activates 8 different types of metabotropic glutamate receptors<ref name="Seven">Seven, Alpay B., et al. “G-Protein Activation by a Metabotropic Glutamate Receptor.” Nature News, Nature Publishing Group, 30 June 2021, https://www.nature.com/articles/s1586-021-03680-3</ref>. Metabotropic Glutamate Receptor 2(mGlu2) is a member of the [https://en.wikipedia.org/wiki/Class_C_GPCR Class C GPCR]Family and can further be classified into the Group II subgroup of metabotropic receptors. Since mGlu2 is a part of the Class C GPCR family, it undergoes small conformational changes to the transmembrane domain (TMD) to move from the inactive to the fully active structure<ref name="Lin" />. Functionality of mGlu2 will be dependent on the concentration of glutamate. Higher concentrations of glutamate will promote stronger signal transduction from the extracellular domain to the transmembrane domain.  
'''Metabotropic glutamate receptors (mGluRs)''' are found in the central nervous system and play a critical role in modulating cell excitability and synaptic transmission <ref name="Lin">PMID: 34135510</ref>.[https://en.wikipedia.org/wiki/Glutamate_(neurotransmitter) Glutamate], shown in Figure 1, is a negatively charged polar amino acid that is the main neurotransmitter in the brain. Glutamate activates 8 different types of metabotropic glutamate receptors<ref name="Seven">Seven, Alpay B., et al. “G-Protein Activation by a Metabotropic Glutamate Receptor.” Nature News, Nature Publishing Group, 30 June 2021, https://www.nature.com/articles/s1586-021-03680-3</ref>. '''Metabotropic Glutamate Receptor 2 (mGlu2)''' is a member of the [https://en.wikipedia.org/wiki/Class_C_GPCR Class C GPCR]Family and can further be classified into the Group II subgroup of metabotropic receptors. Since mGlu2 is a part of the Class C GPCR family, it undergoes small conformational changes to the transmembrane domain (TMD) to move from the inactive to the fully active structure. [https://en.wikipedia.org/wiki/Rhodopsin-like_receptors Class A] and [https://en.wikipedia.org/wiki/Secretin_receptor_family Class B] GPCR Families, however, experience more substantial conformational changes to the TMD<ref name="Lin" />. mGlu2 functionality is dependent on the concentration of glutamate where higher concentrations of glutamate will promote stronger signal transduction from the extracellular domain(ECD) to the TMD<ref name="Lin" />. [[Image:320px-L-Glutamate Structural Formulae.jpg|200px|right|thumb|'''Figure 1.'''Structure of glutamate. Glutamate binding promotes stronger signal transduction to aid in G-protein activation by mGlu2.]]


mGlu2 plays vital roles in memory formation, pain management, and addiction, which makes it an important drug target for Parkinson’s Disease<ref name="Zhang">Zhang, Zhu, et al. “Roles of Glutamate Receptors in Parkinson's Disease.” MDPI, Multidisciplinary Digital Publishing Institute, 6 Sept. 2019, https://dx.doi.org/10.3390%2Fijms20184391.></ref>, Schizophrenia (blue link), Cocaine Addiction<ref name="Yang">Yang, Hong-Ju, et al. “Deletion of Type 2 Metabotropic Glutamate Receptor Decreases Sensitivity to Cocaine Reward in Rats.” Cell Reports, U.S. National Library of Medicine, 11 July 2017, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5555082/.></ref>, and many other neurological conditions.  
mGlu2 plays vital roles in memory formation, pain management, and addiction, which makes it an important drug target for [https://en.wikipedia.org/wiki/Parkinson%27s_disease Parkinson’s Disease],[https://en.wikipedia.org/wiki/Schizophrenia Schizophrenia], [https://en.wikipedia.org/wiki/Cocaine_dependence cocaine dependence], and many other neurological conditions.  


==Structure==
==Structure==


===Overall Structure===
===Overall Structure===
Cryo-EM studies of mGlu2 have yielded adequate structures that have acted as maps to aid in producing a better structural understanding of the inactive and active states of mGlu2<ref name="Lin" />. The overall structure of the mGlu2 is composed of 3 main parts: a ligand binding Venus FlyTrap Domain(VFT), followed by a Cysteine Rich Domain linker to the Transmembrane Domain that contains 7 alpha helices (7TM) on both the <scene name='90/905587/Alphaandbetachain/2'>alpha and beta chains</scene> that aid in the binding of the G-Protein. Class C CPCRs such as mGlu2, are activated by their ability to form dimers. MGlu2 is a homodimer which is imperative to the receptor’s ability to relay signals induced by glutamate from the extracellular domain(ECD) to its transmembrane domain(TMD). The homodimer of mGlu2 contains an alpha chain and a beta chain. Occupation of both ECDs with the agonist, glutamate, is necessary for a fully active mGlu2<ref name="Du">Du, Juan, et al. “Structures of Human mglu2 and mglu7 Homo- and Heterodimers.” Nature News, Nature Publishing Group, 16 June 2021, https://www.nature.com/articles/s41586-021-03641-w.></ref>. However, only one chain in the dimer is responsible for activation of the G-protein, this suggests an asymmetrical signal transduction mechanism for mGlu2<ref name="Lin"/>.  
[https://en.wikipedia.org/wiki/Cryogenic_electron_microscopy Cryo-EM] studies of mGlu2 have yielded adequate structural maps of mGlu2 in various activation states. These maps provided clearer understanding of the conformational changes between the inactive and active states of mGlu2<ref name="Lin" />. The conformational changes allow mGlu2 to move from an inactive <scene name='90/904307/Inactive_to_active_morph/1'>open to a closed</scene> active conformation. The overall <scene name='90/904308/Inactive_structure/2'>structure</scene> of the mGlu2 is composed of 3 main parts. First, a ligand binding <scene name='90/904307/Better_inactive_structure/3'>Venus Fly Trap Domain(VFT)</scene>, that binds two glutamates which are the agonists. This is followed by a <scene name='90/904307/Better_inactive_structure/2'>Cysteine Rich Domain(CRD)</scene> that links the VFT to the TMD. The CRD is helpful in relaying signals for conformational changes in the TMD induced by agonist binding in the VFT<ref name="Lin" />. The VFT and CRD are located in the intracellular domain(ICD), while the TMD is located in the ECD (Figure 2). Finally the <scene name='90/904307/Better_inactive_structure/4'>TMD</scene> contains 7 α-helices (7TM) on both the α and β chains. The TMD aids in the binding of the G-protein. 
[[Image:Domains of mGlu2.jpg|250 px|right|thumb|'''Figure 2.'''Shown above the line is the intracellular region containing the VFT and CRD. Shown below the line is the extracellular region containing the TMD of mGlu2.]]
 
mGlu2 is a [https://en.wikipedia.org/wiki/Protein_dimer homodimer]. Dimerization of mGlu2 is required to relay glutamate binding from the ECD to its TMD. The homodimer of mGlu2 contains an <scene name='90/904308/Alphaandbetachain/9'>α-chain and a β-chain</scene>. Occupation of both ECDs with the agonist, glutamate, is necessary for a fully active mGlu2<ref name="Du">Du, Juan, et al. “Structures of Human mglu2 and mglu7 Homo- and Heterodimers.” Nature News, Nature Publishing Group, 16 June 2021, https://www.nature.com/articles/s41586-021-03641-w.></ref>. However, only one chain in the dimer is responsible for activation of the G-protein, this suggests an asymmetrical signal transduction mechanism for mGlu2<ref name="Lin"/>.
Due to conformational changes, mGlu2 moves between different states: inactive, intermediate, PAM bound, and active (Figure 3).


===Inactive State===
===Inactive State===
A few hallmarks of the inactive structure of mGlu2 are the Venus FlyTrap Domain in the open conformation, well separated Cysteine-Rich Domains, and distinct orientation of the 7 Transmembrane Domains (7TM). Perhaps the most critical component of the inactive form is the asymmetric TM3-TM4 interface formed by both of the 7 alpha helices in the alpha and beta chains in the transmembrane domain. The transmembrane domain is mediated mainly by helix IV on the alpha chain and helix lll on the beta chain of the dimer through hydrophobic interactions. These hydrophobic interactions between both transmembrane helices stabilize inactive conformation of mGlu2<ref name="Lin"/>.
A few hallmarks of the <scene name='90/904308/Inactive_structure/1'>inactive structure</scene> of mGlu2 are the <scene name='90/904307/Better_inactive_structure/3'>VFT</scene> in the open conformation, well separated <scene name='90/904307/Better_inactive_structure/2'>CRD</scene>, and distinct orientation of the 7TM. The most critical component of the inactive form is the <scene name='90/904307/Tmd_helices/9'>asymmetric TM3-TM4 interface</scene> formed by the 7 α-helices in the α and β chains of the 7TM. The inactive structure of mGlu2 is mediated mainly by helices 3 and 4 on both the α and β chains of the dimer through hydrophobic interactions. These <scene name='90/904307/Tm3-tm4_hydrophobic/2'>hydrophobic interactions</scene> between both transmembrane helices stabilize inactive conformation of mGlu2<ref name="Lin"/>.
[[Image:Schematic of mGlu2.jpg|400 px|left|thumb|'''Figure 3.''' Demonstrates the conformational changes of mGlu2.]]


===Intermediate Form===
===Intermediate Form===
Although there are no Cryo-EM images of the intermediate form, it is still a very important state that mGlu2 goes through. The agonist binding site is formed by both lobes of the Venus FlyTrap Domain. The receptor will remain in this inactive state if there are insufficient concentrations of glutamate available<ref name="Du" />. Since glutamate is the main excitatory neurotransmitter in the central nervous system, its ability to bind is extremely important, especially for cell excitability.  
No Cryo-EM structures are currently available for the intermediate form, but it is an important state for the full activation of mGlu2. While in the intermediate form, glutamate binds the agonist binding site. The <scene name='90/904308/Agonist_binding_site/5'>agonist binding site</scene> is formed by both lobes of the VFT. To stabilize the intermediate state, one glutamate will bind, which will cause the closure of one lobe of the VFT <ref name="Seven" />. mGlu2 will still remain inactive after a glutamate is bound. The binding of glutamate promotes signaling down the receptor <ref name="Lin" />.  


===PAM and NAM Bound Form===
===PAM and NAM Bound Form===
A positive allosteric modulator (PAM) or a negative allosteric modulator (NAM) can bind to mGlu2. PAM binds to the receptor, induces conformational changes, which help promote greater affinity for G protein binding. PAM binds in a binding pocket that is created by alpha helices III, V, VI, VII in the transmembrane domain. Upon binding of PAM, it interacts with helix VI, including residues W773, F776, L777, and F780. Due to spatial hindrance, helix VI is shifted downward, causing conformational changes. NAM, however, reduces the affinity for G protein binding. NAM binds to the same binding pocket as PAM and also interacts with residue W773. Due to the structure of NAM, it occupies the binding site a little deeper than PAM. This causes NAM to push on the side chain of W773 towards helix VII<ref name="Lin"/>. PAM and NAM induce different conformational changes, which result in different outcomes.
Moving from the intermediate state, a second glutamate will bind in the other lobe of the VFT. This will help close the VFT and move the CRD closer together <ref name="Seven" />. A positive allosteric modulator (PAM) or a negative allosteric modulator (NAM) will then come in and bind to mGlu2. PAM and NAM induce different conformational changes, which result in different outcomes. <scene name='90/904308/Pam/4'>PAM binds</scene> the TMD and promotes greater affinity for the binding of the G-protein. There are different types of PAMs that can bind to the TMD but this page focuses on JNJ-40411813<ref name="Lin"/>. PAM binds in a binding pocket that is created by helices 3, 5, 6, and 7 in the <scene name='90/904307/Tmd_helices/9'>asymmetric TM3-TM4 interface</scene> . Within helix 6, the hydrophobic binding is composed of W773, F776, L777, and F780. Due to spatial hindrance caused by the binding of PAM, helix 6 is shifted downward, causing reorientation of the TMD. This reorientation creates a cleft in the TMD for the G-protein to bind<ref name="Lin"/>. NAM, however, reduces the affinity for G protein binding. <scene name='90/904308/Nam_bound/2'>NAM binds</scene> to the same binding pocket as PAM and also interacts with residue W773, but NAM occupies the binding site a little deeper than PAM. This causes NAM to push the side chain of W773 towards helix 7, which does not form the cleft for G-protein binding<ref name="Lin"/>.  


[[Image:PAM binding pocket correct.png |300px|right|thumb|'''Figure 3''':This is PAM located in its binding pocket. PAM, JNJ-40411813, is shown in magenta and colored by atom. The image shows four labelled alpha helices (III, V, VI, and VII) that create the binding pocket in the 7TM region of mGlu2 for PAM to bind within. The binding of PAM promotes the function of the mGLu2.]]
[[Image:PAM binding pocket correct.png |300px|right|thumb|'''Figure 4.'''PAM binding pocket. PAM, JNJ-40411813, is shown in magenta and colored by atom type, four labelled binding helices (3, 5, 6, and 7) create the binding pocket in the 7TM region for PAM binding. PAM binding promotes G-protein activation by mGLu2.]]


===Active State===
===Active State===
Upon binding of the PAM, helix VI is shifted downward in the transmembrane domain. This downward shift induces a reorientation of the transmembrane domain from its original TM3-TM4 asymmetric dimer interface in the inactive form to now a TM6-TM6 asymmetric dimer interface. The downward shift of helix VI is crucial for the receptor’s transformation from the inactive to the active form for 2 main reasons: (1) reorientation breaks key interactions in the transmembrane domain that stabilize the inactive form (2) positions intracellular loops of the helices in the transmembrane domain to assist in the binding and recognitions of the G-Protein.
The downward shift of helix 6, caused by PAM binding, induces a reorientation of the TMD from its original TM3-TM4 asymmetric dimer interface in the inactive form to an <scene name='90/904308/Active_7_tm_transparent/1'>asymmetric TM6-TM6 interface</scene>. The downward shift of helix 6 is crucial for the receptor’s transformation from the inactive to the active form for 2 main reasons: (1) reorientation breaks key interactions in the TMD that stabilize the inactive form and (2) repositioning <scene name='90/904308/Active_structure/7'>intracellular loops</scene> of in the TMD to assist in the binding and recognitions of the <scene name='90/904308/G-protein/1'>G-Protein</scene>. The G-protein is made up of three subunits: <scene name='90/904308/Alpha_subunit/1'>α-subunit</scene>, <scene name='90/904308/Beta_subunit/1'>β-subunit</scene>, and a <scene name='90/904308/Gamma_subunit/1'>γ-subunit</scene>.


====G-Protein Recognition====
====G-Protein Recognition====
Reorientation positions helix lll on either the alpha or beta chain because both have the ability to bind to the G-protein but only one chain is required for full receptor activation. The intracellular region of helix lll mainly contributes to the interactions with the alpha subunit of the G-protein. Intracellular Loop 2 plays a key role in G-protein coupling as well by building polar interaction networks through its ionic interactions with the alpha subunit of the G-protein. Lastly, mGlu2 residue E666 forms a salt bridge with an alpha N residue (R32) on the alpha subunit which further destabilizes the inactive conformation<ref name="Lin"/>.
In order for the G-protein to bind to mGlu2, so that it can be fully active, the G-protein has to be recognized by the receptor. Transition to the active state also reorients helix 3 in both monomers to enable binding to the G-protein; Yet only one chain is required for full receptor activation. The intracellular region of helix 3 contributes the main interactions with the α-subunit of the G-protein. Intracellular Loop 2(ICL2) also builds a polar interaction network with the G-protein through its ionic interactions with the <scene name='90/904308/Active_structure/6'>α-subunit</scene> of the G-protein. The ionic interactions formed further destabilize the inactive conformation so that the G-protein can be recognized and mGlu2 becomes fully active<ref name="Lin"/>.


====G-protein Binding====
====G-protein Binding====
The PAM induced downward shift of helix IV coupled with the reorientation of the transmembrane domain to a TM6-TM6 asymmetric interface, opens up a cleft on the intracellular surface of the receptor. This cleft allows a “hook-like” region, that is composed of the last 4 residues of the alpha subunit of the G-protein, to move in adjacent to helix IV in the transmembrane domain. One very important residue in this interaction is C351on the hook that participates in hydrophobic interactions with Intracellular loop 2 and helix IV. It is due to these interactions that the C-terminal region of the alpha subunit of the G-protein binds in the shallow groove formed by intracellular loops 2 and 3 and residues on helices lll and lV<ref name="Lin" />.The receptor is now fully active with the dimer coupled only to one G-protein, the Venus FlyTrap Domain in the closed conformation resulting in a tighter form, and the transmembrane domain helices reoriented on both the alpha and beta chains to form an asymmetric dimer interface.  
The PAM induced downward shift of helix 6 coupled with the reorientation of the transmembrane domain to a TM6-TM6 asymmetric interface, opens up a cleft on the intracellular surface of the receptor. This cleft allows a <scene name='90/904308/Hook_region/2'>hook-like region</scene>, from terminal 4 residues of the α-subunit of the G-protein to move in adjacent to helix 4 in the TMD. Within this interaction, <scene name='90/904308/Hook_region_recognition/2'>C351</scene> on the hook participates in hydrophobic interactions with ICL2 and helix 4. These interactions allow the C-terminal region of the G-protein α-subunit to bind in the cleft formed by ICL2 and residues on helix 4<ref name="Lin" />.The receptor is now <scene name='90/904307/Main_active_image/4'>fully active</scene> with the dimer coupled only to one G-protein. The VFT is in the closed conformation and the TMD helices are also reoriented in both monomers to form an asymmetric dimer interface. These interactions allow the G-protein to bind which causes mGlu2 to be fully active. Now that mGlu2 is active it can regulate different signaling transductions in the cell<ref name="Lin"/>.  


==Clinical Relevance==
[https://en.wikipedia.org/wiki/Metabotropic_glutamate_receptor mGluRs]occur both presynaptically and postsynaptically in the Central Nervous System <ref name="Wiki">“Metabotropic Glutamate Receptor.” Wikipedia, Wikimedia Foundation, 27 Mar. 2022, https://en.wikipedia.org/wiki/Metabotropic_glutamate_receptor</ref>. mGluRs play a variety of roles, such as in disease, [https://en.wikipedia.org/wiki/Synaptic_plasticity synaptic plasticity], and modulation of other receptors<ref name="Wiki"/>. Manipulation of these receptors are starting to be used as drug targets for [https://en.wikipedia.org/wiki/Parkinson%27s_disease Parkinson's Disease], [https://en.wikipedia.org/wiki/Fragile_X_syndrome Fragile X Syndrome], and Schizophrenia.


== Clinical Relevance ==
====Schizophrenia====
[https://en.wikipedia.org/wiki/Schizophrenia Schizophrenia]is a chronic brain disorder that affects a person’s ability to think, feel, and behave<ref name="Schizophrenia">\“Schizophrenia.” National Institute of Mental Health, U.S. Department of Health and Human Services, https://www.nimh.nih.gov/health/topics/schizophrenia</ref>. The exact cause of Schizophrenia is unknown currently<ref name="Schizophrenia" />. The symptoms from the disease can vary from patient to patient, but they can be broken down into positive, negative, and cognitive symptoms<ref name="Ellaithy"/>. Although antipsychotic drugs help to treat Schizophrenia, these drugs only target positive symptoms and have limited efficacy against negative and cognitive symptoms <ref name="Muguruza">PMID: 27242534</ref>. mGlu2 receptors are a therapeutic target for Schizophrenia, as mGlu2 receptors are expressed in regions associated with Schizophrenia, such as the prefrontal cortex, hippocampus, the thalamus, and amygdala <ref name="Ellaithy">PMID: 26148747</ref>. Specifically mGlu2 agonists, LY379268 and LY40439, exhibit antipsychotic properties by increasing dopamine extracellular levels<ref name="Muguruza"/>. Increasing dopamine levels improves negative symptoms of Schizophrenia <ref name="Muguruza"/>. mGlu2 agonists also increase cortical serotonin levels, which is a property seen in many antipsychotic drugs. These clinical properties give potential for mGlu2 and its agonists as future treatments for Schizophrenia<ref name="Muguruza"/>.


</StructureSection>
==3D Structures==
[[7mtq]], mGlu2 inactive <br />
[[7mtr]], mGlu2 PAM bound <br />
[[7epe]], mGlu2 NAM bound <br />
[[7mts]], mGlu2 active <br />


</StructureSection>
== References ==
== References ==
<references/>
<references/>
==Student Contributors==
==Student Contributors==
Frannie Brewer and Ashley Wilkinson
Frannie Brewer
Ashley Wilkinson

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA, Jaime Prilusky, Ashley R. Wilkinson, R. Jeremy Johnson