3es5: Difference between revisions

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<StructureSection load='3es5' size='340' side='right'caption='[[3es5]], [[Resolution|resolution]] 3.30&Aring;' scene=''>
<StructureSection load='3es5' size='340' side='right'caption='[[3es5]], [[Resolution|resolution]] 3.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3es5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Penicillium_stoloniferum_virus_f Penicillium stoloniferum virus f]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ES5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ES5 FirstGlance]. <br>
<table><tr><td colspan='2'>[[3es5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Penicillium_stoloniferum_virus_F Penicillium stoloniferum virus F]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ES5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ES5 FirstGlance]. <br>
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1ej6|1ej6]], [[2btv|2btv]], [[1uf2|1uf2]], [[1m1c|1m1c]], [[1k4r|1k4r]]</div></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.3&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3es5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3es5 OCA], [https://pdbe.org/3es5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3es5 RCSB], [https://www.ebi.ac.uk/pdbsum/3es5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3es5 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3es5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3es5 OCA], [https://pdbe.org/3es5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3es5 RCSB], [https://www.ebi.ac.uk/pdbsum/3es5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3es5 ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
== Function ==
== Publication Abstract from PubMed ==
[https://www.uniprot.org/uniprot/Q4G3H1_9VIRU Q4G3H1_9VIRU]
For most dsRNA viruses, the genome-enclosing capsid comprises 120 copies of a single capsid protein (CP) organized into 60 icosahedrally equivalent dimers, generally identified as 2 nonsymmetrically interacting CP molecules with extensive lateral contacts. The crystal structure of a partitivirus, Penicillium stoloniferum virus F (PsV-F), reveals a different organization, in which the CP dimer is related by almost-perfect local 2-fold symmetry, forms prominent surface arches, and includes extensive structure swapping between the 2 subunits. An electron cryomicroscopy map of PsV-F shows that the disordered N terminus of each CP molecule interacts with the dsRNA genome and probably participates in its packaging or transcription. Intact PsV-F particles mediate semiconservative transcription, and transcripts are likely to exit through negatively charged channels at the icosahedral 5-fold axes. Other findings suggest that the PsV-F capsid is assembled from dimers of CP dimers, with an arrangement similar to flavivirus E glycoproteins.
 
Atomic structure reveals the unique capsid organization of a dsRNA virus.,Pan J, Dong L, Lin L, Ochoa WF, Sinkovits RS, Havens WM, Nibert ML, Baker TS, Ghabrial SA, Tao YJ Proc Natl Acad Sci U S A. 2009 Feb 25. PMID:19246376<ref>PMID:19246376</ref>
 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 3es5" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Penicillium stoloniferum virus f]]
[[Category: Penicillium stoloniferum virus F]]
[[Category: Baker, T S]]
[[Category: Baker TS]]
[[Category: Dong, L]]
[[Category: Dong L]]
[[Category: Ghabrial, S A]]
[[Category: Ghabrial SA]]
[[Category: Havens, W M]]
[[Category: Havens WM]]
[[Category: Lin, L]]
[[Category: Lin L]]
[[Category: Nibert, M L]]
[[Category: Nibert ML]]
[[Category: Ochoa, W F]]
[[Category: Ochoa WF]]
[[Category: Pan, J]]
[[Category: Pan J]]
[[Category: Sinkovits, R S]]
[[Category: Sinkovits RS]]
[[Category: Tao, Y J]]
[[Category: Tao YJ]]
[[Category: T=2 capsid]]
[[Category: Double stranded rna virus]]
[[Category: Dsrna virus]]
[[Category: Icosahedral virus]]
[[Category: Partitivirus]]
[[Category: Rna virus]]
[[Category: T=2]]
[[Category: Virus]]

Latest revision as of 09:36, 3 April 2024

Crystal Structure of Partitivirus (PsV-F)Crystal Structure of Partitivirus (PsV-F)

Structural highlights

3es5 is a 2 chain structure with sequence from Penicillium stoloniferum virus F. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 3.3Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q4G3H1_9VIRU

3es5, resolution 3.30Å

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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