3dri: Difference between revisions
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<StructureSection load='3dri' size='340' side='right'caption='[[3dri]], [[Resolution|resolution]] 1.80Å' scene=''> | <StructureSection load='3dri' size='340' side='right'caption='[[3dri]], [[Resolution|resolution]] 1.80Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3dri]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/ | <table><tr><td colspan='2'>[[3dri]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactococcus_lactis_subsp._cremoris_MG1363 Lactococcus lactis subsp. cremoris MG1363]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DRI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DRI FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dri FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dri OCA], [https://pdbe.org/3dri PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dri RCSB], [https://www.ebi.ac.uk/pdbsum/3dri PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dri ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dri FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dri OCA], [https://pdbe.org/3dri PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dri RCSB], [https://www.ebi.ac.uk/pdbsum/3dri PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dri ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/A2RJ53_LACLM A2RJ53_LACLM] | |||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Lactococcus lactis subsp. cremoris MG1363]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Berntsson | [[Category: Berntsson RP-A]] | ||
[[Category: Doeven | [[Category: Doeven MK]] | ||
[[Category: Duurkens | [[Category: Duurkens RH]] | ||
[[Category: Marrink | [[Category: Marrink S-J]] | ||
[[Category: Poolman | [[Category: Poolman B]] | ||
[[Category: Sengupta | [[Category: Sengupta D]] | ||
[[Category: Slotboom | [[Category: Slotboom D-J]] | ||
[[Category: Thunnissen | [[Category: Thunnissen A-M]] | ||
Latest revision as of 18:13, 1 November 2023
Crystal structure of Lactococcal OppA co-crystallized with an octamer peptide in an open conformationCrystal structure of Lactococcal OppA co-crystallized with an octamer peptide in an open conformation
Structural highlights
FunctionEvolutionary Conservation Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf. Publication Abstract from PubMedOligopeptide-binding protein A (OppA) from Lactococcus lactis binds peptides of an exceptionally wide range of lengths (4-35 residues), with no apparent sequence preference. Here, we present the crystal structures of OppA in the open- and closed-liganded conformations. The structures directly explain the protein's phenomenal promiscuity. A huge cavity allows binding of very long peptides, and a lack of constraints for the position of the N and C termini of the ligand is compatible with binding of peptides with varying lengths. Unexpectedly, the peptide's amino-acid composition (but not the exact sequence) appears to have a function in selection, with a preference for proline-rich peptides containing at least one isoleucine. These properties can be related to the physiology of the organism: L. lactis is auxotrophic for branched chain amino acids and favours proline-rich caseins as a source of amino acids. We propose a new mechanism for peptide selection based on amino-acid composition rather than sequence. The structural basis for peptide selection by the transport receptor OppA.,Berntsson RP, Doeven MK, Fusetti F, Duurkens RH, Sengupta D, Marrink SJ, Thunnissen AM, Poolman B, Slotboom DJ EMBO J. 2009 Mar 19. PMID:19300437[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
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