1wq2: Difference between revisions
No edit summary |
No edit summary |
||
Line 3: | Line 3: | ||
<StructureSection load='1wq2' size='340' side='right'caption='[[1wq2]], [[Resolution|resolution]] 2.40Å' scene=''> | <StructureSection load='1wq2' size='340' side='right'caption='[[1wq2]], [[Resolution|resolution]] 2.40Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[1wq2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/ | <table><tr><td colspan='2'>[[1wq2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WQ2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WQ2 FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Neutron Diffraction, [[Resolution|Resolution]] 2.4Å</td></tr> | ||
<tr id=' | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DOD:DEUTERATED+WATER'>DOD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wq2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wq2 OCA], [https://pdbe.org/1wq2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wq2 RCSB], [https://www.ebi.ac.uk/pdbsum/1wq2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wq2 ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wq2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wq2 OCA], [https://pdbe.org/1wq2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wq2 RCSB], [https://www.ebi.ac.uk/pdbsum/1wq2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wq2 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
[https://www.uniprot.org/uniprot/DSVD_DESVH DSVD_DESVH] May play an essential role in dissimilatory sulfite reduction. | |||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Line 33: | Line 33: | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Desulfovibrio vulgaris]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Arai | [[Category: Arai S]] | ||
[[Category: Chatake | [[Category: Chatake T]] | ||
[[Category: Higuchi | [[Category: Higuchi Y]] | ||
[[Category: Mizuno | [[Category: Mizuno N]] | ||
[[Category: Niimura | [[Category: Niimura N]] | ||
[[Category: Tanaka | [[Category: Tanaka I]] | ||
[[Category: Voordouw | [[Category: Voordouw G]] | ||
Latest revision as of 10:57, 25 October 2023
Neutron Crystal Structure Of Dissimilatory Sulfite Reductase D (DsrD)Neutron Crystal Structure Of Dissimilatory Sulfite Reductase D (DsrD)
Structural highlights
FunctionDSVD_DESVH May play an essential role in dissimilatory sulfite reduction. Evolutionary Conservation![]() Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf. Publication Abstract from PubMedDissimilatory sulfite reductase D (DsrD) from Desulfovibrio vulgaris has been crystallized for a neutron diffraction study. The initial crystals obtained were too small for the neutron experiment. In order to obtain a larger crystal (>1 mm3), a combination of two techniques was developed to determine the optimum crystallization conditions: a crystallization phase diagram was obtained, followed by crystal-quality assessment via X-ray diffraction. Using conditions determined in this manner, a large single crystal (1.7 mm3) of DsrD protein was subsequently grown in D(2)O solution by the macroseeding technique. A neutron diffraction experiment was carried out using the BIX-3 diffractometer at the Japan Atomic Energy Research Institute (JAERI), collecting data to 2.4 A resolution from an optimized crystal. Crystallization and preliminary neutron analysis of the dissimilatory sulfite reductase D (DsrD) protein from the sulfate-reducing bacterium Desulfovibrio vulgaris.,Chatake T, Mizuno N, Voordouw G, Higuchi Y, Arai S, Tanaka I, Niimura N Acta Crystallogr D Biol Crystallogr. 2003 Dec;59(Pt 12):2306-9. Epub 2003, Nov 27. PMID:14646103[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
|
|