1sp8: Difference between revisions
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<StructureSection load='1sp8' size='340' side='right'caption='[[1sp8]], [[Resolution|resolution]] 2.00Å' scene=''> | <StructureSection load='1sp8' size='340' side='right'caption='[[1sp8]], [[Resolution|resolution]] 2.00Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[1sp8]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/ | <table><tr><td colspan='2'>[[1sp8]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Zea_mays Zea mays]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SP8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SP8 FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> | ||
<tr id=' | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sp8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sp8 OCA], [https://pdbe.org/1sp8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sp8 RCSB], [https://www.ebi.ac.uk/pdbsum/1sp8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sp8 ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sp8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sp8 OCA], [https://pdbe.org/1sp8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sp8 RCSB], [https://www.ebi.ac.uk/pdbsum/1sp8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sp8 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
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<jmolCheckbox> | <jmolCheckbox> | ||
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sp/1sp8_consurf.spt"</scriptWhenChecked> | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sp/1sp8_consurf.spt"</scriptWhenChecked> | ||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/ | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: | [[Category: Zea mays]] | ||
[[Category: Auerbach | [[Category: Auerbach G]] | ||
[[Category: Freigang | [[Category: Freigang J]] | ||
[[Category: Fritze | [[Category: Fritze IM]] | ||
[[Category: Huber | [[Category: Huber R]] | ||
[[Category: Linden | [[Category: Linden L]] | ||
[[Category: Steinbacher | [[Category: Steinbacher S]] | ||
Latest revision as of 10:24, 30 October 2024
4-Hydroxyphenylpyruvate Dioxygenase4-Hydroxyphenylpyruvate Dioxygenase
Structural highlights
Evolutionary Conservation Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf. Publication Abstract from PubMedThe transformation of 4-hydroxyphenylpyruvate to homogentisate, catalyzed by 4-hydroxyphenylpyruvate dioxygenase (HPPD), plays an important role in degrading aromatic amino acids. As the reaction product homogentisate serves as aromatic precursor for prenylquinone synthesis in plants, the enzyme is an interesting target for herbicides. In this study we report the first x-ray structures of the plant HPPDs of Zea mays and Arabidopsis in their substrate-free form at 2.0 A and 3.0 A resolution, respectively. Previous biochemical characterizations have demonstrated that eukaryotic enzymes behave as homodimers in contrast to prokaryotic HPPDs, which are homotetramers. Plant and bacterial enzymes share the overall fold but use orthogonal surfaces for oligomerization. In addition, comparison of both structures provides direct evidence that the C-terminal helix gates substrate access to the active site around a nonheme ferrous iron center. In the Z. mays HPPD structure this helix packs into the active site, sequestering it completely from the solvent. In contrast, in the Arabidopsis structure this helix tilted by about 60 degrees into the solvent and leaves the active site fully accessible. By elucidating the structure of plant HPPD enzymes we aim to provide a structural basis for the development of new herbicides. The crystal structures of Zea mays and Arabidopsis 4-hydroxyphenylpyruvate dioxygenase.,Fritze IM, Linden L, Freigang J, Auerbach G, Huber R, Steinbacher S Plant Physiol. 2004 Apr;134(4):1388-400. PMID:15084729[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
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