7r7c: Difference between revisions

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OCA

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-'''Unreleased structure'''
-The entry 7r7c is ON HOLD
+==State E2 nucleolar 60S ribosomal biogenesis intermediate - L1 stalk local model==
+<StructureSection load='7r7c' size='340' side='right'caption='[[7r7c]], [[Resolution|resolution]] 3.71&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[7r7c]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_BY4741 Saccharomyces cerevisiae BY4741]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7R7C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7R7C FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.71&#8491;</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7r7c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7r7c OCA], [https://pdbe.org/7r7c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7r7c RCSB], [https://www.ebi.ac.uk/pdbsum/7r7c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7r7c ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/RL1A_YEAST RL1A_YEAST]
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+DEAD-box ATPases are ubiquitous enzymes essential in all aspects of RNA biology. However, the limited in vitro catalytic activities described for these enzymes are at odds with their complex cellular roles, most notably in driving large-scale RNA remodeling steps during the assembly of ribonucleoproteins (RNPs). We describe cryo-EM structures of 60S ribosomal biogenesis intermediates that reveal how context-specific RNA unwinding by the DEAD-box ATPase Spb4 results in extensive, sequence-specific remodeling of rRNA secondary structure. Multiple cis and trans interactions stabilize Spb4 in a post-catalytic, high-energy intermediate that drives the organization of the three-way junction at the base of rRNA domain IV. This mechanism explains how limited strand separation by DEAD-box ATPases is leveraged to provide non-equilibrium directionality and ensure efficient and accurate RNP assembly.
-Authors: Cruz, V.E., Sekulski, K., Peddada, N., Erzberger, J.P.
+Sequence-specific remodeling of a topologically complex RNP substrate by Spb4.,Cruz VE, Sekulski K, Peddada N, Sailer C, Balasubramanian S, Weirich CS, Stengel F, Erzberger JP Nat Struct Mol Biol. 2022 Dec;29(12):1228-1238. doi: 10.1038/s41594-022-00874-9. , Epub 2022 Dec 8. PMID:36482249<ref>PMID:36482249</ref>
-Description: State E2 nucleolar 60S ribosomal biogenesis intermediate -L1 stalk local model
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Unreleased Structures]]
+</div>
-[[Category: Cruz, V.E]]
+<div class="pdbe-citations 7r7c" style="background-color:#fffaf0;"></div>
-[[Category: Sekulski, K]]
-[[Category: Peddada, N]]
+==See Also==
-[[Category: Erzberger, J.P]]
+*[[GTP-binding protein 3D structures|GTP-binding protein 3D structures]]
+*[[Ribosome biogenesis protein 3D structures|Ribosome biogenesis protein 3D structures]]
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Saccharomyces cerevisiae BY4741]]
+[[Category: Cruz VE]]
+[[Category: Erzberger JP]]
+[[Category: Peddada N]]
+[[Category: Sekulski K]]