2q5r: Difference between revisions

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<StructureSection load='2q5r' size='340' side='right'caption='[[2q5r]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
<StructureSection load='2q5r' size='340' side='right'caption='[[2q5r]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2q5r]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/"micrococcus_aureus"_(rosenbach_1884)_zopf_1885 "micrococcus aureus" (rosenbach 1884) zopf 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Q5R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Q5R FirstGlance]. <br>
<table><tr><td colspan='2'>[[2q5r]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Q5R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Q5R FirstGlance]. <br>
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2jgv|2jgv]], [[2jg1|2jg1]]</div></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lacC ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 "Micrococcus aureus" (Rosenbach 1884) Zopf 1885])</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Tagatose-6-phosphate_kinase Tagatose-6-phosphate kinase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.144 2.7.1.144] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2q5r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2q5r OCA], [https://pdbe.org/2q5r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2q5r RCSB], [https://www.ebi.ac.uk/pdbsum/2q5r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2q5r ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2q5r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2q5r OCA], [https://pdbe.org/2q5r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2q5r RCSB], [https://www.ebi.ac.uk/pdbsum/2q5r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2q5r ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/LACC_STAAC LACC_STAAC]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q5/2q5r_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q5/2q5r_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
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</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Tagatose-6-phosphate kinase]]
[[Category: Staphylococcus aureus]]
[[Category: Battaile, K]]
[[Category: Battaile K]]
[[Category: Chirgadze, N Y]]
[[Category: Chirgadze NY]]
[[Category: Dharamsi, A]]
[[Category: Dharamsi A]]
[[Category: Domagala, M]]
[[Category: Domagala M]]
[[Category: Edwards, A M]]
[[Category: Edwards AM]]
[[Category: McGrath, T E]]
[[Category: McGrath TE]]
[[Category: Pai, E F]]
[[Category: Pai EF]]
[[Category: Romanov, V]]
[[Category: Romanov V]]
[[Category: Soloveychik, M]]
[[Category: Soloveychik M]]
[[Category: Thambipillai, D]]
[[Category: Thambipillai D]]
[[Category: Virag, C]]
[[Category: Virag C]]
[[Category: Conformational change]]
[[Category: D-tagatose-6-phosphate kinase]]
[[Category: Kinase]]
[[Category: Lactose metabolism]]
[[Category: Phosphoryl transfer]]
[[Category: Transferase]]

Latest revision as of 08:27, 17 October 2024

Structure of apo Staphylococcus aureus D-tagatose-6-phosphate kinaseStructure of apo Staphylococcus aureus D-tagatose-6-phosphate kinase

Structural highlights

2q5r is a 4 chain structure with sequence from Staphylococcus aureus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.3Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

LACC_STAAC

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2q5r, resolution 2.30Å

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA