1ty0: Difference between revisions

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<StructureSection load='1ty0' size='340' side='right'caption='[[1ty0]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
<StructureSection load='1ty0' size='340' side='right'caption='[[1ty0]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1ty0]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"micrococcus_scarlatinae"_klein_1884 "micrococcus scarlatinae" klein 1884]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TY0 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1TY0 FirstGlance]. <br>
<table><tr><td colspan='2'>[[1ty0]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pyogenes Streptococcus pyogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TY0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TY0 FirstGlance]. <br>
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1ty2|1ty2]]</div></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">spe-j ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1314 "Micrococcus scarlatinae" Klein 1884])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ty0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ty0 OCA], [https://pdbe.org/1ty0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ty0 RCSB], [https://www.ebi.ac.uk/pdbsum/1ty0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ty0 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1ty0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ty0 OCA], [http://pdbe.org/1ty0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ty0 RCSB], [http://www.ebi.ac.uk/pdbsum/1ty0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1ty0 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q7BAE3_STRPY Q7BAE3_STRPY]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ty0 ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ty0 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The protein toxins known as superantigens (SAgs), which are expressed primarily by the pathogenic bacteria Staphylococcus aureus and Streptococcus pyogenes, are highly potent immunotoxins with the ability to cause serious human disease. These SAgs share a conserved fold but quite varied activities. In addition to their common role of cross-linking T-cell receptors (TCRs) and major histocompatibility complex class II (MHC-II) molecules, some SAgs can cross-link MHC-II, using diverse mechanisms. The crystal structure of the streptococcal superantigen streptococcal pyrogenic exotoxin J (SPE-J) has been solved at 1.75 A resolution (R = 0.209, R(free) = 0.240), both with and without bound Zn(2+). The structure displays the canonical two-domain SAg fold and a zinc-binding site that is shared by a subset of other SAgs. Most importantly, in concentrated solution and in the crystal, SPE-J forms dimers. These dimers, which are present in two different crystal environments, form via the same face that is used for TCR binding in other SAgs. Site-directed mutagenesis shows that this face is also used for TCR binding SPE-J. We infer that SPE-J cross-links TCR and MHC-II as a monomer but that dimers may form on the antigen-presenting cell surface, cross-linking MHC-II and eliciting intracellular signaling.
Crystallographic and mutational data show that the streptococcal pyrogenic exotoxin J can use a common binding surface for T-cell receptor binding and dimerization.,Baker HM, Proft T, Webb PD, Arcus VL, Fraser JD, Baker EN J Biol Chem. 2004 Sep 10;279(37):38571-6. Epub 2004 Jul 7. PMID:15247241<ref>PMID:15247241</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 1ty0" style="background-color:#fffaf0;"></div>


==See Also==
==See Also==
*[[Exotoxin 3D structures|Exotoxin 3D structures]]
*[[Exotoxin 3D structures|Exotoxin 3D structures]]
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Micrococcus scarlatinae klein 1884]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Arcus, V L]]
[[Category: Streptococcus pyogenes]]
[[Category: Baker, E N]]
[[Category: Arcus VL]]
[[Category: Baker, H M]]
[[Category: Baker EN]]
[[Category: Fraser, J D]]
[[Category: Baker HM]]
[[Category: Proft, T]]
[[Category: Fraser JD]]
[[Category: Webb, P D]]
[[Category: Proft T]]
[[Category: Dimerization]]
[[Category: Webb PD]]
[[Category: Immune system]]
[[Category: Mutagenesis]]
[[Category: Superantigen]]
[[Category: T-cell receptor binding]]

Latest revision as of 11:42, 14 February 2024

Crystal structure of the streptococcal pyrogenic exotoxin J (SPE-J)Crystal structure of the streptococcal pyrogenic exotoxin J (SPE-J)

Structural highlights

1ty0 is a 3 chain structure with sequence from Streptococcus pyogenes. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.75Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q7BAE3_STRPY

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1ty0, resolution 1.75Å

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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