1ppy: Difference between revisions

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 <StructureSection load='1ppy' size='340' side='right'caption='[[1ppy]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1ppy]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PPY OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1PPY FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1ppy]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PPY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PPY FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSX:S-OXY+CYSTEINE'>CSX</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CSX:S-OXY+CYSTEINE'>CSX</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1aw8|1aw8]], [[1pqe|1pqe]], [[1pqf|1pqf]], [[1pqh|1pqh]], [[1pt0|1pt0]], [[1pt1|1pt1]], [[1pyq|1pyq]], [[1pyu|1pyu]]</div></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ppy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ppy OCA], [https://pdbe.org/1ppy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ppy RCSB], [https://www.ebi.ac.uk/pdbsum/1ppy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ppy ProSAT]</span></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PAND OR B0131 OR C0160 OR Z0142 OR ECS0135 OR SF0128 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aspartate_1-decarboxylase Aspartate 1-decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.11 4.1.1.11] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1ppy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ppy OCA], [http://pdbe.org/1ppy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ppy RCSB], [http://www.ebi.ac.uk/pdbsum/1ppy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1ppy ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/PAND_ECOLI PAND_ECOLI]] Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.<ref>PMID:6767707</ref>
+[https://www.uniprot.org/uniprot/PAND_ECOLI PAND_ECOLI] Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.<ref>PMID:6767707</ref>
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 39: / Line 36: @@
 __TOC__
 </StructureSection>
-[[Category: Bacillus coli migula 1895]]
+[[Category: Escherichia coli]]
-[[Category: Aspartate 1-decarboxylase]]
 [[Category: Large Structures]]
-[[Category: Abell, C]]
+[[Category: Abell C]]
-[[Category: Blundell, T L]]
+[[Category: Blundell TL]]
-[[Category: Chirgadze, D Y]]
+[[Category: Chirgadze DY]]
-[[Category: Kilkenny, M L]]
+[[Category: Kilkenny ML]]
-[[Category: Lobley, C M.C]]
+[[Category: Lobley CMC]]
-[[Category: Matak-Vinkovic, D]]
+[[Category: Matak-Vinkovic D]]
-[[Category: Schmitzberger, F]]
+[[Category: Schmitzberger F]]
-[[Category: Smith, A G]]
+[[Category: Smith AG]]
-[[Category: Vinkovic, M]]
+[[Category: Vinkovic M]]
-[[Category: Webb, M E]]
+[[Category: Webb ME]]
-[[Category: Witty, M]]
+[[Category: Witty M]]
-[[Category: Decarboxylase]]
-[[Category: Intramolecular protein self-processing]]
-[[Category: Lyase]]
-[[Category: Pantothenate pathway]]