1htf: Difference between revisions

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New page: left|200px<br /> <applet load="1htf" size="450" color="white" frame="true" align="right" spinBox="true" caption="1htf, resolution 2.2Å" /> '''X-RAY CRYSTALLOGRAPH...
 
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[[Image:1htf.gif|left|200px]]<br />
<applet load="1htf" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1htf, resolution 2.2&Aring;" />
'''X-RAY CRYSTALLOGRAPHIC STUDIES OF A SERIES OF PENICILLIN-DERIVED ASYMMETRIC INHIBITORS OF HIV-1 PROTEASE'''<br />


==Overview==
==X-RAY CRYSTALLOGRAPHIC STUDIES OF A SERIES OF PENICILLIN-DERIVED ASYMMETRIC INHIBITORS OF HIV-1 PROTEASE==
In the development of a treatment for AIDS, the HIV-1 protease has been, identified as a good target enzyme for inhibitor design. We previously, reported a series of dimeric penicillin-derived C2-symmetric HIV-1, protease inhibitors [Humber, D., et al. (1993) J. Med. Chem. 36, 3120-3128]. In an attempt to reduce the size and optimize the binding of, these C2-symmetric inhibitors, molecular modeling studies led to a novel, series of monomeric penicillin-derived inhibitors of HIV-1 protease. The, binding modes of these monomeric inhibitors have been characterized by, X-ray crystallographic and NMR studies. Crystal structures of HIV-1, protease complexed to three inhibitors (GR123976, GR126045, and GR137615), from this series identify the molecular details of the interactions. The, binding of GR123976 (IC50 = 2.3 microM) exhibits good hydrophobic contacts, but few electrostatic interactions. A strategy of structure-based design, and chemical synthesis led to the elaboration of GR123976 to optimize, interactions with the protein. Crystallographic analysis of HIV-1 protease, complexed to GR126045 and GR137615 identified these interactions with the, catalytic aspartates and the protein binding pockets. The crystal, structures of the three complexes confirm the presence of the major, interactions modeled in order to optimize potency and reveal details of, the molecular recognition by HIV-1 protease of this novel series of, nonpeptidic inhibitors.
<StructureSection load='1htf' size='340' side='right'caption='[[1htf]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1htf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HTF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1HTF FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=G26:2-(BENZYLCARBAMOYL-PHENYLACETYLAMINO-METHYL)-5,5-DIMETHYL-THIAZOLIDINE-4-CARBOXYLIC+ACID+(HYDROXYMETHYL-2-PHENYLETHYL)AMIDE'>G26</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1htf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1htf OCA], [https://pdbe.org/1htf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1htf RCSB], [https://www.ebi.ac.uk/pdbsum/1htf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1htf ProSAT]</span></td></tr>
</table>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ht/1htf_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1htf ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
In the development of a treatment for AIDS, the HIV-1 protease has been identified as a good target enzyme for inhibitor design. We previously reported a series of dimeric penicillin-derived C2-symmetric HIV-1 protease inhibitors [Humber, D., et al. (1993) J. Med. Chem. 36, 3120-3128]. In an attempt to reduce the size and optimize the binding of these C2-symmetric inhibitors, molecular modeling studies led to a novel series of monomeric penicillin-derived inhibitors of HIV-1 protease. The binding modes of these monomeric inhibitors have been characterized by X-ray crystallographic and NMR studies. Crystal structures of HIV-1 protease complexed to three inhibitors (GR123976, GR126045, and GR137615) from this series identify the molecular details of the interactions. The binding of GR123976 (IC50 = 2.3 microM) exhibits good hydrophobic contacts but few electrostatic interactions. A strategy of structure-based design and chemical synthesis led to the elaboration of GR123976 to optimize interactions with the protein. Crystallographic analysis of HIV-1 protease complexed to GR126045 and GR137615 identified these interactions with the catalytic aspartates and the protein binding pockets. The crystal structures of the three complexes confirm the presence of the major interactions modeled in order to optimize potency and reveal details of the molecular recognition by HIV-1 protease of this novel series of nonpeptidic inhibitors.


==About this Structure==
X-ray crystallographic studies of a series of penicillin-derived asymmetric inhibitors of HIV-1 protease.,Jhoti H, Singh OM, Weir MP, Cooke R, Murray-Rust P, Wonacott A Biochemistry. 1994 Jul 19;33(28):8417-27. PMID:8031777<ref>PMID:8031777</ref>
1HTF is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1] with G26 as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1HTF OCA].


==Reference==
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
X-ray crystallographic studies of a series of penicillin-derived asymmetric inhibitors of HIV-1 protease., Jhoti H, Singh OM, Weir MP, Cooke R, Murray-Rust P, Wonacott A, Biochemistry. 1994 Jul 19;33(28):8417-27. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=8031777 8031777]
</div>
<div class="pdbe-citations 1htf" style="background-color:#fffaf0;"></div>
 
==See Also==
*[[Immunodeficiency virus protease 3D structures|Immunodeficiency virus protease 3D structures]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Human immunodeficiency virus 1]]
[[Category: Human immunodeficiency virus 1]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Jhoti, H.]]
[[Category: Jhoti H]]
[[Category: Murray-Rust, P.]]
[[Category: Murray-Rust P]]
[[Category: Wonacott, A.]]
[[Category: Wonacott A]]
[[Category: G26]]
[[Category: hydrolase(acid proteinase)]]
 
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Thu Nov  8 14:07:36 2007''

Latest revision as of 08:08, 12 June 2024

X-RAY CRYSTALLOGRAPHIC STUDIES OF A SERIES OF PENICILLIN-DERIVED ASYMMETRIC INHIBITORS OF HIV-1 PROTEASEX-RAY CRYSTALLOGRAPHIC STUDIES OF A SERIES OF PENICILLIN-DERIVED ASYMMETRIC INHIBITORS OF HIV-1 PROTEASE

Structural highlights

1htf is a 2 chain structure with sequence from Human immunodeficiency virus 1. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.2Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

In the development of a treatment for AIDS, the HIV-1 protease has been identified as a good target enzyme for inhibitor design. We previously reported a series of dimeric penicillin-derived C2-symmetric HIV-1 protease inhibitors [Humber, D., et al. (1993) J. Med. Chem. 36, 3120-3128]. In an attempt to reduce the size and optimize the binding of these C2-symmetric inhibitors, molecular modeling studies led to a novel series of monomeric penicillin-derived inhibitors of HIV-1 protease. The binding modes of these monomeric inhibitors have been characterized by X-ray crystallographic and NMR studies. Crystal structures of HIV-1 protease complexed to three inhibitors (GR123976, GR126045, and GR137615) from this series identify the molecular details of the interactions. The binding of GR123976 (IC50 = 2.3 microM) exhibits good hydrophobic contacts but few electrostatic interactions. A strategy of structure-based design and chemical synthesis led to the elaboration of GR123976 to optimize interactions with the protein. Crystallographic analysis of HIV-1 protease complexed to GR126045 and GR137615 identified these interactions with the catalytic aspartates and the protein binding pockets. The crystal structures of the three complexes confirm the presence of the major interactions modeled in order to optimize potency and reveal details of the molecular recognition by HIV-1 protease of this novel series of nonpeptidic inhibitors.

X-ray crystallographic studies of a series of penicillin-derived asymmetric inhibitors of HIV-1 protease.,Jhoti H, Singh OM, Weir MP, Cooke R, Murray-Rust P, Wonacott A Biochemistry. 1994 Jul 19;33(28):8417-27. PMID:8031777[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

See Also

References

  1. Jhoti H, Singh OM, Weir MP, Cooke R, Murray-Rust P, Wonacott A. X-ray crystallographic studies of a series of penicillin-derived asymmetric inhibitors of HIV-1 protease. Biochemistry. 1994 Jul 19;33(28):8417-27. PMID:8031777

1htf, resolution 2.20Å

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