5dt9: Difference between revisions

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<StructureSection load='5dt9' size='340' side='right'caption='[[5dt9]], [[Resolution|resolution]] 2.66&Aring;' scene=''>
<StructureSection load='5dt9' size='340' side='right'caption='[[5dt9]], [[Resolution|resolution]] 2.66&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5dt9]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibch Vibch]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DT9 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5DT9 FirstGlance]. <br>
<table><tr><td colspan='2'>[[5dt9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 Vibrio cholerae O1 biovar El Tor str. N16961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DT9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DT9 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.663&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pdxB, VC_2108 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243277 VIBCH])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/4-phosphoerythronate_dehydrogenase 4-phosphoerythronate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.290 1.1.1.290] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5dt9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dt9 OCA], [https://pdbe.org/5dt9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5dt9 RCSB], [https://www.ebi.ac.uk/pdbsum/5dt9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5dt9 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5dt9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dt9 OCA], [http://pdbe.org/5dt9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dt9 RCSB], [http://www.ebi.ac.uk/pdbsum/5dt9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5dt9 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/PDXB_VIBCH PDXB_VIBCH]] Catalyzes the oxidation of erythronate-4-phosphate to 3-hydroxy-2-oxo-4-phosphonooxybutanoate.[HAMAP-Rule:MF_01825]  
[https://www.uniprot.org/uniprot/PDXB_VIBCH PDXB_VIBCH] Catalyzes the oxidation of erythronate-4-phosphate to 3-hydroxy-2-oxo-4-phosphonooxybutanoate.[HAMAP-Rule:MF_01825]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: 4-phosphoerythronate dehydrogenase]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Vibch]]
[[Category: Vibrio cholerae O1 biovar El Tor str. N16961]]
[[Category: Anderson, W F]]
[[Category: Anderson WF]]
[[Category: Structural genomic]]
[[Category: Savchenko A]]
[[Category: Savchenko, A]]
[[Category: Skarina T]]
[[Category: Skarina, T]]
[[Category: Stogios PJ]]
[[Category: Stogios, P J]]
[[Category: Csgid]]
[[Category: Dehydrogenase]]
[[Category: Erythronate-4-phosphate dehydrogenase]]
[[Category: Nad binding]]
[[Category: National institute of allergy and infectious disease]]
[[Category: Niaid]]
[[Category: Oxidoreductase]]

Latest revision as of 00:58, 29 June 2023

Crystal structure of a putative D-Erythronate-4-Phosphate Dehydrogenase from Vibrio choleraeCrystal structure of a putative D-Erythronate-4-Phosphate Dehydrogenase from Vibrio cholerae

Structural highlights

5dt9 is a 1 chain structure with sequence from Vibrio cholerae O1 biovar El Tor str. N16961. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.663Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

PDXB_VIBCH Catalyzes the oxidation of erythronate-4-phosphate to 3-hydroxy-2-oxo-4-phosphonooxybutanoate.[HAMAP-Rule:MF_01825]

5dt9, resolution 2.66Å

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OCA
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