5d6p: Difference between revisions

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 <StructureSection load='5d6p' size='340' side='right'caption='[[5d6p]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5d6p]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"micrococcus_aureus"_(rosenbach_1884)_zopf_1885 "micrococcus aureus" (rosenbach 1884) zopf 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5D6P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5D6P FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5d6p]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5D6P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5D6P FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=57U:1-ETHYL-3-[4-(HYDROXYMETHYL)-5-(1H-PYRROL-2-YL)-1,3-THIAZOL-2-YL]UREA'>57U</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5cph|5cph]], [[5ctu|5ctu]], [[5ctw|5ctw]], [[5ctx|5ctx]], [[5cty|5cty]], [[5d6q|5d6q]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=57U:1-ETHYL-3-[4-(HYDROXYMETHYL)-5-(1H-PYRROL-2-YL)-1,3-THIAZOL-2-YL]UREA'>57U</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">gyrB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 "Micrococcus aureus" (Rosenbach 1884) Zopf 1885])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5d6p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5d6p OCA], [https://pdbe.org/5d6p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5d6p RCSB], [https://www.ebi.ac.uk/pdbsum/5d6p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5d6p ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA_topoisomerase_(ATP-hydrolyzing) DNA topoisomerase (ATP-hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.99.1.3 5.99.1.3] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5d6p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5d6p OCA], [http://pdbe.org/5d6p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5d6p RCSB], [http://www.ebi.ac.uk/pdbsum/5d6p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5d6p ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/GYRB_STAAU GYRB_STAAU]] DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings.[HAMAP-Rule:MF_01898]
+[https://www.uniprot.org/uniprot/GYRB_STAAU GYRB_STAAU] DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings.[HAMAP-Rule:MF_01898]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 29: / Line 27: @@
 </StructureSection>
 [[Category: Large Structures]]
-[[Category: Andersen, O A]]
+[[Category: Staphylococcus aureus]]
-[[Category: Barker, J]]
+[[Category: Andersen OA]]
-[[Category: Cheng, R K]]
+[[Category: Barker J]]
-[[Category: Cross, J B]]
+[[Category: Cheng RK]]
-[[Category: Dolle, R E]]
+[[Category: Cross JB]]
-[[Category: Felicetti, B]]
+[[Category: Dolle RE]]
-[[Category: Kahmann, J]]
+[[Category: Felicetti B]]
-[[Category: Lippa, B]]
+[[Category: Kahmann J]]
-[[Category: Romero, J A.C]]
+[[Category: Lippa B]]
-[[Category: Ryan, M D]]
+[[Category: Romero JAC]]
-[[Category: Scheich, C]]
+[[Category: Ryan MD]]
-[[Category: Wood, M]]
+[[Category: Scheich C]]
-[[Category: Yang, Q]]
+[[Category: Wood M]]
-[[Category: Zhang, J]]
+[[Category: Yang Q]]
-[[Category: Dna gyrase]]
+[[Category: Zhang J]]
-[[Category: Gyrb]]
-[[Category: Isomerase-isomerase inhibitor complex]]
-[[Category: Ligand]]
-[[Category: Structure-based design]]