6c6q: Difference between revisions

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 <StructureSection load='6c6q' size='340' side='right'caption='[[6c6q]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[6c6q]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice] and [http://en.wikipedia.org/wiki/Murine_norovirus_1 Murine norovirus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6C6Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6C6Q FirstGlance]. <br>
+<table><tr><td colspan='2'>[[6c6q]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Murine_norovirus_1 Murine norovirus 1] and [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6C6Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6C6Q FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3lq6|3lq6]], [[6e47|6e47]], [[6e48|6e48]], [[6c74|6c74]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Cd300lf, Clm1, Lmir3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6c6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6c6q OCA], [https://pdbe.org/6c6q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6c6q RCSB], [https://www.ebi.ac.uk/pdbsum/6c6q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6c6q ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6c6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6c6q OCA], [http://pdbe.org/6c6q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6c6q RCSB], [http://www.ebi.ac.uk/pdbsum/6c6q PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6c6q ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/CLM1_MOUSE CLM1_MOUSE]] Acts as an inhibitory receptor for myeloid cells and mast cells. Inhibits osteoclast formation. Induces macrophage cell death upon engagement.<ref>PMID:14662855</ref> <ref>PMID:17438331</ref> <ref>PMID:18097021</ref>
+[https://www.uniprot.org/uniprot/CAPSD_MNV1 CAPSD_MNV1] Capsid protein self assembles to form an icosahedral capsid with a T=3 symmetry, about 38 nm in diameter, and consisting of 180 capsid proteins. A smaller form of capsid with a diameter of 23 nm might be capsid proteins assembled as icosahedron with T=1 symmetry. The capsid encapsulates the genomic RNA and is decorated with VP2 proteins (By similarity). Mediates virion attachment to the host cell receptor CD300LF (PubMed:27540007, PubMed:30194229).[UniProtKB:Q83884]<ref>PMID:27540007</ref> <ref>PMID:30194229</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 20: / Line 19: @@
 </div>
 <div class="pdbe-citations 6c6q" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
 == References ==
 <references/>
@@ Line 25: / Line 27: @@
 </StructureSection>
 [[Category: Large Structures]]
-[[Category: Lk3 transgenic mice]]
 [[Category: Murine norovirus 1]]
-[[Category: Fremont, D H]]
+[[Category: Mus musculus]]
-[[Category: Nelson, C A]]
+[[Category: Fremont DH]]
-[[Category: Capsid protein]]
+[[Category: Nelson CA]]
-[[Category: Cd300lf]]
-[[Category: Clm-1]]
-[[Category: Clm1]]
-[[Category: Cmrf-35-like molecule-1]]
-[[Category: Dir2]]
-[[Category: Ig-v like]]
-[[Category: Igsf13]]
-[[Category: Irem1]]
-[[Category: Lmir3]]
-[[Category: Myeloid receptor]]
-[[Category: Norovirus]]
-[[Category: Pigr3]]
-[[Category: Protruding domain]]
-[[Category: Viral protein-lipid binding protein complex]]
-[[Category: Vp1]]