Collagenase (non-MMP): Difference between revisions

Latest revision as of 11:41, 5 June 2024

Collagenase (Col) catalyzes the breaking of peptide bonds in collagen. Col cleaves pro-collagen to create collagen. Some collagenases are part of the Matrix metalloproteinase family.

Collagenase G recognises and unravels collagen microfibrils into triple helices and unwind them^[1].
Collagenase H targets collagen III^[2].

Relevance

Col is used for therapy of wounds, Dupuytren's contracture and Peyronie's disease.

Structural highlights

Clostridium histolycum collagenase contains several domains among them: peptidase domain (residues 331-721), polycystic kidney disease domain (PKD residues 792-880), collagen-binding domain (CBD residues 1003-1118). The peptidase domain contains a , a and an .^[3] Water molecules are shown as red spheres. .

3D Structures of collagenase

Collagenase 3D structures

Collagenase H peptidase domain (cyan) complex with peptidic inhibitor, isopentenyl phosphate, Ca+2 (green) and Zn+2 (grey) ions (PDB entry 4arf)

Drag the structure with the mouse to rotate

ReferencesReferences

↑ Eckhard U, Schonauer E, Nuss D, Brandstetter H. Structure of collagenase G reveals a chew-and-digest mechanism of bacterial collagenolysis. Nat Struct Mol Biol. 2011 Sep 25;18(10):1109-14. doi: 10.1038/nsmb.2127. PMID:21947205 doi:10.1038/nsmb.2127
↑ Fujio A, Murayama K, Yamagata Y, Watanabe K, Imura T, Inagaki A, Ohbayashi N, Shima H, Sekiguchi S, Fujimori K, Igarashi K, Ohuchi N, Satomi S, Goto M. Collagenase H is crucial for isolation of rat pancreatic islets. Cell Transplant. 2014;23(10):1187-98. PMID:23768818 doi:10.3727/096368913X668654
↑ Eckhard U, Schonauer E, Brandstetter H. Structural basis for activity regulation and substrate preference of clostridial collagenases G, H, and T. J Biol Chem. 2013 May 23. PMID:23703618 doi:10.1074/jbc.M112.448548

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky

[1] Eckhard U, Schonauer E, Nuss D, Brandstetter H. Structure of collagenase G reveals a chew-and-digest mechanism of bacterial collagenolysis. Nat Struct Mol Biol. 2011 Sep 25;18(10):1109-14. doi: 10.1038/nsmb.2127. PMID:21947205 doi:10.1038/nsmb.2127

[2] Fujio A, Murayama K, Yamagata Y, Watanabe K, Imura T, Inagaki A, Ohbayashi N, Shima H, Sekiguchi S, Fujimori K, Igarashi K, Ohuchi N, Satomi S, Goto M. Collagenase H is crucial for isolation of rat pancreatic islets. Cell Transplant. 2014;23(10):1187-98. PMID:23768818 doi:10.3727/096368913X668654

[3] Eckhard U, Schonauer E, Brandstetter H. Structural basis for activity regulation and substrate preference of clostridial collagenases G, H, and T. J Biol Chem. 2013 May 23. PMID:23703618 doi:10.1074/jbc.M112.448548

[1]

[2]

[3]

@@ Line 2: / Line 2: @@
 '''Collagenase''' (Col) catalyzes the breaking of peptide bonds in collagen.  Col cleaves pro-collagen to create collagen.  Some collagenases are part of the [[Matrix metalloproteinase]] family.
+*'''Collagenase G''' recognises and unravels collagen microfibrils into triple helices and unwind them<ref>PMID:21947205</ref>.
+*'''Collagenase H''' targets collagen III<ref>PMID:23768818</ref>.
 == Relevance ==
@@ Line 17: / Line 19: @@
 </StructureSection>
-== 3D Structures of collagenase ==
-Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
-{{#tree:id=OrganizedByTopic|openlevels=0|
-*Collagenase G
-**[[2y3u]], [[2y50]] – ChColG residues 119-880 – ''Clostridium histolycum''<br />
-**[[4are]] - ChColG residues 119-790<br />
-**[[2y6i]] - ChColG residues 119-880 + peptide<br />
-**[[4jrw]], [[4tn9]], [[4aqo]], [[2y72]] - ChColG PKD domain<br />
-**[[1nqj]] - ChColG CBD domain <br />
-**[[1nqd]], [[2o8o]], [[4hpk]], [[5iku]] - ChColG CBD domain + Ca<br />
-*Collagenase H
-**[[4u6t]] - ChColH PKD domain<br />
-**[[4jgu]], [[4u7k]] - ChColH PKD domain + Ca<br />
-**[[3jqw]], [[3jqx]] - ChColH CBD domain + Ca<br />
-**[[4ar1]] – ChColH  peptidase domain <br />
-**[[4arf]] – CtColH  peptidase domain + peptide inhibitor <br />
-**[[5o7e]] – ColH  peptidase domain + inhibitor – ''Hathewaya histolytica''<br />
-*Collagenase T
-**[[4ar9]] – CtColT  peptidase domain - ''Clostridium tetani''<br />
-**[[4ar8]] – CtColT  peptidase domain + peptide inhibitor <br />
-*Collagenase
-**[[1azz]] – Col + ecotin – fiddler crab<br />
-**[[1hyl]], [[2hlc]] – Col – ''Hypoderma lineatum''<br />
-**[[5sv5]] – Col C-terminal – ''Bacillus anthracis''<br />
-*Collagenase 3 or matrix metalloproteinase 13 see [[Matrix metalloproteinase]]
-}}
 == References ==
 <references/>
 [[Category:Topic Page]]