1dy4: Difference between revisions

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 <StructureSection load='1dy4' size='340' side='right'caption='[[1dy4]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1dy4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Trichoderma_reesei Trichoderma reesei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DY4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DY4 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1dy4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Trichoderma_reesei_QM9414 Trichoderma reesei QM9414]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DY4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DY4 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SNP:1-(ISOPROPYLAMINO)-3-(1-NAPHTHYLOXY)-2-PROPANOL'>SNP</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene>, <scene name='pdbligand=SNP:1-(ISOPROPYLAMINO)-3-(1-NAPHTHYLOXY)-2-PROPANOL'>SNP</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1cel|1cel]], [[2cel|2cel]], [[3cel|3cel]], [[4cel|4cel]], [[5cel|5cel]], [[6cel|6cel]], [[7cel|7cel]], [[8cel|8cel]], [[1cbh|1cbh]], [[2cbh|2cbh]], [[1az6|1az6]], [[1azh|1azh]], [[1azj|1azj]], [[1azk|1azk]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dy4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dy4 OCA], [https://pdbe.org/1dy4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dy4 RCSB], [https://www.ebi.ac.uk/pdbsum/1dy4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dy4 ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulose_1,4-beta-cellobiosidase_(non-reducing_end) Cellulose 1,4-beta-cellobiosidase (non-reducing end)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.91 3.2.1.91] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dy4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dy4 OCA], [http://pdbe.org/1dy4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1dy4 RCSB], [http://www.ebi.ac.uk/pdbsum/1dy4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1dy4 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/GUX1_HYPJE GUX1_HYPJE]] The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes: (1) Endoglucanases which cut internal beta-1,4-glucosidic bonds; (2) Exocellobiohydrolases that cut the dissaccharide cellobiose from the non-reducing end of the cellulose polymer chain; (3) Beta-1,4-glucosidases which hydrolyze the cellobiose and other short cello-oligosaccharides to glucose.
+[https://www.uniprot.org/uniprot/GUX1_HYPJE GUX1_HYPJE] The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes: (1) Endoglucanases which cut internal beta-1,4-glucosidic bonds; (2) Exocellobiohydrolases that cut the dissaccharide cellobiose from the non-reducing end of the cellulose polymer chain; (3) Beta-1,4-glucosidases which hydrolyze the cellobiose and other short cello-oligosaccharides to glucose.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
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    <jmolCheckbox>
      <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dy/1dy4_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
@@ Line 34: / Line 32: @@
 ==See Also==
 *[[Cellobiohydrolase 3D structures|Cellobiohydrolase 3D structures]]
-*[[Glucanase|Glucanase]]
+*[[Glucanase 3D structures|Glucanase 3D structures]]
 == References ==
 <references/>
@@ Line 40: / Line 38: @@
 </StructureSection>
 [[Category: Large Structures]]
-[[Category: Trichoderma reesei]]
+[[Category: Trichoderma reesei QM9414]]
-[[Category: Divne, C]]
+[[Category: Divne C]]
-[[Category: Henriksson, H]]
+[[Category: Henriksson H]]
-[[Category: Isaksson, R]]
+[[Category: Isaksson R]]
-[[Category: Johansson, G]]
+[[Category: Johansson G]]
-[[Category: Jones, T A]]
+[[Category: Jones TA]]
-[[Category: Pettersson, G]]
+[[Category: Pettersson G]]
-[[Category: Stahlberg, J]]
+[[Category: Stahlberg J]]
-[[Category: Cellulose deagradation]]
-[[Category: Chiral separation]]
-[[Category: Glycoprotein]]
-[[Category: Glycosidase]]
-[[Category: Hydrolase]]