6omm: Difference between revisions

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-'''Unreleased structure'''
-The entry 6omm is ON HOLD
+==Cryo-EM structure of formyl peptide receptor 2/lipoxin A4 receptor in complex with Gi==
+<SX load='6omm' size='340' side='right' viewer='molstar' caption='[[6omm]], [[Resolution|resolution]] 3.17&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[6omm]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6OMM OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6OMM FirstGlance]. <br>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CLR:CHOLESTEROL'>CLR</scene>, <scene name='pdbligand=PLM:PALMITIC+ACID'>PLM</scene></td></tr>
+<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=QXV:'>QXV</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6omm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6omm OCA], [http://pdbe.org/6omm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6omm RCSB], [http://www.ebi.ac.uk/pdbsum/6omm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6omm ProSAT]</span></td></tr>
+</table>
+== Function ==
+[[http://www.uniprot.org/uniprot/GBB1_HUMAN GBB1_HUMAN]] Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.<ref>PMID:18611381</ref>  [[http://www.uniprot.org/uniprot/FPR2_HUMAN FPR2_HUMAN]] Low affinity receptor for N-formyl-methionyl peptides, which are powerful neutrophil chemotactic factors (PubMed:1374236). Binding of FMLP to the receptor causes activation of neutrophils (PubMed:1374236). This response is mediated via a G-protein that activates a phosphatidylinositol-calcium second messenger system (PubMed:1374236). The activation of LXA4R could result in an anti-inflammatory outcome counteracting the actions of proinflammatory signals such as LTB4 (leukotriene B4) (PubMed:9547339). Receptor for the chemokine-like protein FAM19A5, mediating FAM19A5-stimulated macrophage chemotaxis and the inhibitory effect on TNFSF11/RANKL-induced osteoclast differentiation (By similarity).[UniProtKB:O88536]<ref>PMID:1374236</ref> <ref>PMID:9547339</ref>  [[http://www.uniprot.org/uniprot/GNAI1_HUMAN GNAI1_HUMAN]] Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(i) proteins are involved in hormonal regulation of adenylate cyclase: they inhibit the cyclase in response to beta-adrenergic stimuli. The inactive GDP-bound form prevents the association of RGS14 with centrosomes and is required for the translocation of RGS14 from the cytoplasm to the plasma membrane. May play a role in cell division.<ref>PMID:17635935</ref> <ref>PMID:17264214</ref>  [[http://www.uniprot.org/uniprot/GBG2_HUMAN GBG2_HUMAN]] Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction (By similarity).
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Formylpeptide receptors (FPRs) as G protein-coupled receptors (GPCRs) can recognize formylpeptides derived from pathogens or host cells to function in host defense and cell clearance. In addition, FPRs, especially FPR2, can also recognize other ligands with a large chemical diversity generated at different stages of inflammation to either promote or resolve inflammation in order to maintain a balanced inflammatory response. The mechanism underlying promiscuous ligand recognition and activation of FPRs is not clear. Here we report a cryo-EM structure of FPR2-Gi signaling complex with a peptide agonist. The structure reveals a widely open extracellular region with an amphiphilic environment for ligand binding. Together with computational docking and simulation, the structure suggests a molecular basis for the recognition of formylpeptides and a potential mechanism of receptor activation, and reveals conserved and divergent features in Gi coupling. Our results provide a basis for understanding the molecular mechanism of the functional promiscuity of FPRs.
-Authors: Zhuang, Y., Liu, H., de Waal, P.W., Zhou, X.E., Wang, L., Meng, X., Zhao, G., Kang, Y., Melcher, K., Xu, H.E., Zhang, C.
+Structure of formylpeptide receptor 2-Gi complex reveals insights into ligand recognition and signaling.,Zhuang Y, Liu H, Edward Zhou X, Kumar Verma R, de Waal PW, Jang W, Xu TH, Wang L, Meng X, Zhao G, Kang Y, Melcher K, Fan H, Lambert NA, Eric Xu H, Zhang C Nat Commun. 2020 Feb 14;11(1):885. doi: 10.1038/s41467-020-14728-9. PMID:32060286<ref>PMID:32060286</ref>
-Description: Cryo-EM structure of formyl peptide receptor 2/lipoxin A4 receptor in complex with Gi
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Unreleased Structures]]
+</div>
-[[Category: Zhou, X.E]]
+<div class="pdbe-citations 6omm" style="background-color:#fffaf0;"></div>
-[[Category: Xu, H.E]]
+==See Also==
+*[[Transducin 3D structures|Transducin 3D structures]]
+== References ==
+<references/>
+__TOC__
+</SX>
+[[Category: Large Structures]]
 [[Category: Kang, Y]]
+[[Category: Liu, H]]
 [[Category: Melcher, K]]
 [[Category: Meng, X]]
-[[Category: Zhuang, Y]]
+[[Category: Waal, P W.de]]
-[[Category: De Waal, P.W]]
 [[Category: Wang, L]]
-[[Category: Liu, H]]
+[[Category: Xu, H E]]
+[[Category: Zhang, C]]
 [[Category: Zhao, G]]
-[[Category: Zhang, C]]
+[[Category: Zhou, X E]]
+[[Category: Zhuang, Y]]
+[[Category: Formyl peptide receptor 2/lipoxin a4 receptor]]
+[[Category: Gi protein]]
+[[Category: Gpcr]]
+[[Category: Signaling protein]]