3col: Difference between revisions

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[[Image:3col.jpg|left|200px]]


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==Crystal structure of putative transcription regulator from Lactobacillus plantarum==
The line below this paragraph, containing "STRUCTURE_3col", creates the "Structure Box" on the page.
<StructureSection load='3col' size='340' side='right'caption='[[3col]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3col]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Lacpl Lacpl]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3COL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3COL FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-->
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_3col|  PDB=3col  |  SCENE= }}
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lp_3090 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=220668 LACPL])</td></tr>
 
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3col FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3col OCA], [https://pdbe.org/3col PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3col RCSB], [https://www.ebi.ac.uk/pdbsum/3col PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3col ProSAT], [https://www.topsan.org/Proteins/MCSG/3col TOPSAN]</span></td></tr>
'''Crystal structure of putative transcription regulator from Lactobacillus plantarum'''
</table>
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
==About this Structure==
Check<jmol>
3COL is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Lactobacillus_plantarum_wcfs1 Lactobacillus plantarum wcfs1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3COL OCA].  
  <jmolCheckbox>
[[Category: Lactobacillus plantarum wcfs1]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/co/3col_consurf.spt"</scriptWhenChecked>
[[Category: Single protein]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Bigelow, L.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Chang, C.]]
  </jmolCheckbox>
[[Category: Freeman, L.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3col ConSurf].
[[Category: Joachimiak, A.]]
<div style="clear:both"></div>
[[Category: MCSG, Midwest Center for Structural Genomics.]]
__TOC__
</StructureSection>
[[Category: Lacpl]]
[[Category: Large Structures]]
[[Category: Bigelow, L]]
[[Category: Chang, C]]
[[Category: Freeman, L]]
[[Category: Joachimiak, A]]
[[Category: Structural genomic]]
[[Category: Dna-binding]]
[[Category: Dna-binding]]
[[Category: Lactobacillus plantarum]]
[[Category: Lactobacillus plantarum]]
[[Category: Mcsg]]
[[Category: Mcsg]]
[[Category: Midwest center for structural genomic]]
[[Category: PSI, Protein structure initiative]]
[[Category: Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Structural genomic]]
[[Category: Transcription regulation]]
[[Category: Transcription regulation]]
[[Category: Transcription regulator]]
[[Category: Transcription regulator]]

Latest revision as of 10:40, 2 February 2022

Crystal structure of putative transcription regulator from Lactobacillus plantarumCrystal structure of putative transcription regulator from Lactobacillus plantarum

Structural highlights

3col is a 2 chain structure with sequence from Lacpl. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
NonStd Res:
Gene:lp_3090 (LACPL)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3col, resolution 2.10Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA