User:Jaime Prilusky/Test/Viewer: Difference between revisions

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The addition of the ''viewer'' parameter to ''&lt;StructureSection'' allows to choose between alternative engines for rendering a structure. Current valid values are '''jmol''' <ref>Jmol: an open-source browser-based HTML5 viewer and stand-alone Java viewer for chemical structures in 3D [http://jmol.org] </ref> (default) and '''molstar''' <ref>Mol* (/'molstar/) is an open collaboration started by PDBe and RCSB PDB to provide a technology stack for data delivery and analysis tools of macromolecules [https://molstar.org/]</ref>.  
The addition of the ''viewer'' parameter to ''&lt;StructureSection'' allows to choose between alternative engines for rendering a structure. Current valid values are '''jmol''' <ref>Jmol: an open-source browser-based HTML5 viewer and stand-alone Java viewer for chemical structures in 3D [http://jmol.org] </ref> (default) and '''molstar''' <ref>Mol* (/'molstar/) is an open collaboration started by PDBe and RCSB PDB to provide a technology stack for data delivery and analysis tools of macromolecules [https://molstar.org/]</ref>.  
==Under development==
==Under development==
A few features need additional development to work under different viewers, like &lt;scene> and SAT. Example are these links to <scene name="/12/3456/Sample/1">color</scene> by Group, and to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein.
A few features need additional development to work under different viewers, like &lt;scene>, initialView and SAT. Examples are these links to <scene name="/12/3456/Sample/1">color</scene> by Group, and to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein.
==Help on the tools==
==Help on the tools==
The cheatsheet for using LiteMol viewer, available at [[http://www.ebi.ac.uk/pdbe/litemol PDBe]], should be Ok for the MolStar viewer in use.
The cheatsheet for using LiteMol viewer, available at [[http://www.ebi.ac.uk/pdbe/litemol PDBe]], should be Ok for the MolStar viewer in use.

Latest revision as of 10:52, 23 February 2019

Caption for this structure

  1. Jmol: an open-source browser-based HTML5 viewer and stand-alone Java viewer for chemical structures in 3D [1]
  2. Mol* (/'molstar/) is an open collaboration started by PDBe and RCSB PDB to provide a technology stack for data delivery and analysis tools of macromolecules [2]
  3. Down the Rabbit-Hole. Alice's Adventures in Wonderland, by Lewis Carroll