6ny2: Difference between revisions

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New page: '''Unreleased structure''' The entry 6ny2 is ON HOLD Authors: Liu, J.J., Orlova, N., Nogales, E., Doudna, J.A. Description: CasX-gRNA-DNA(45bp) state I [[Category: Unreleased Structure...
 
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'''Unreleased structure'''


The entry 6ny2 is ON HOLD
==CasX-gRNA-DNA(45bp) state I==
<SX load='6ny2' size='340' side='right' viewer='molstar' caption='[[6ny2]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[6ny2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Deltaproteobacteria_bacterium Deltaproteobacteria bacterium]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=6e79 6e79]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NY2 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6NY2 FirstGlance]. <br>
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DD725_10130 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2026735 Deltaproteobacteria bacterium])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6ny2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ny2 OCA], [http://pdbe.org/6ny2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ny2 RCSB], [http://www.ebi.ac.uk/pdbsum/6ny2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ny2 ProSAT]</span></td></tr>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The RNA-guided CRISPR-associated (Cas) proteins Cas9 and Cas12a provide adaptive immunity against invading nucleic acids, and function as powerful tools for genome editing in a wide range of organisms. Here we reveal the underlying mechanisms of a third, fundamentally distinct RNA-guided genome-editing platform named CRISPR-CasX, which uses unique structures for programmable double-stranded DNA binding and cleavage. Biochemical and in vivo data demonstrate that CasX is active for Escherichia coli and human genome modification. Eight cryo-electron microscopy structures of CasX in different states of assembly with its guide RNA and double-stranded DNA substrates reveal an extensive RNA scaffold and a domain required for DNA unwinding. These data demonstrate how CasX activity arose through convergent evolution to establish an enzyme family that is functionally separate from both Cas9 and Cas12a.


Authors: Liu, J.J., Orlova, N., Nogales, E., Doudna, J.A.
CasX enzymes comprise a distinct family of RNA-guided genome editors.,Liu JJ, Orlova N, Oakes BL, Ma E, Spinner HB, Baney KLM, Chuck J, Tan D, Knott GJ, Harrington LB, Al-Shayeb B, Wagner A, Brotzmann J, Staahl BT, Taylor KL, Desmarais J, Nogales E, Doudna JA Nature. 2019 Feb;566(7743):218-223. doi: 10.1038/s41586-019-0908-x. Epub 2019 Feb, 4. PMID:30718774<ref>PMID:30718774</ref>


Description: CasX-gRNA-DNA(45bp) state I
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
[[Category: Unreleased Structures]]
</div>
<div class="pdbe-citations 6ny2" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
</SX>
[[Category: Deltaproteobacteria bacterium]]
[[Category: Large Structures]]
[[Category: Doudna, J A]]
[[Category: Liu, J J]]
[[Category: Nogales, E]]
[[Category: Nogales, E]]
[[Category: Doudna, J.A]]
[[Category: Liu, J.J]]
[[Category: Orlova, N]]
[[Category: Orlova, N]]
[[Category: Casx]]
[[Category: Crispr]]
[[Category: Rna binding protein-rna-dna complex]]
[[Category: Sgrna]]
[[Category: Target dna]]

Latest revision as of 06:36, 11 April 2020

CasX-gRNA-DNA(45bp) state ICasX-gRNA-DNA(45bp) state I

6ny2, resolution 3.20Å

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