6c5n: Difference between revisions

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 ==Crystal structure of Staphylococcus aureus ketol-acid reductoisomerase with hydroxyoxamate inhibitor 1==
-<StructureSection load='6c5n' size='340' side='right' caption='[[6c5n]], [[Resolution|resolution]] 1.67&Aring;' scene=''>
+<StructureSection load='6c5n' size='340' side='right'caption='[[6c5n]], [[Resolution|resolution]] 1.67&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[6c5n]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6C5N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6C5N FirstGlance]. <br>
+<table><tr><td colspan='2'>[[6c5n]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus_RF122 Staphylococcus aureus RF122]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6C5N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6C5N FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=81B:(cyclopentylamino)(oxo)acetic+acid'>81B</scene>, <scene name='pdbligand=EN4:[cyclopentyl(hydroxy)amino](oxo)acetic+acid'>EN4</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.673&#8491;</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ketol-acid_reductoisomerase Ketol-acid reductoisomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.86 1.1.1.86] </span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=81B:(cyclopentylamino)(oxo)acetic+acid'>81B</scene>, <scene name='pdbligand=EN4:[cyclopentyl(hydroxy)amino](oxo)acetic+acid'>EN4</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6c5n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6c5n OCA], [http://pdbe.org/6c5n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6c5n RCSB], [http://www.ebi.ac.uk/pdbsum/6c5n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6c5n ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6c5n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6c5n OCA], [https://pdbe.org/6c5n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6c5n RCSB], [https://www.ebi.ac.uk/pdbsum/6c5n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6c5n ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/ILVC_STAAB ILVC_STAAB]] Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.
+[https://www.uniprot.org/uniprot/ILVC_STAAB ILVC_STAAB] Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.
+==See Also==
+*[[Ketol-acid reductoisomerase 3D structures|Ketol-acid reductoisomerase 3D structures]]
 __TOC__
 </StructureSection>
-[[Category: Ketol-acid reductoisomerase]]
+[[Category: Large Structures]]
-[[Category: Guddat, L W]]
+[[Category: Staphylococcus aureus RF122]]
-[[Category: Kandale, A]]
+[[Category: Guddat LW]]
-[[Category: McGeary, R P]]
+[[Category: Kandale A]]
-[[Category: Patel, K M]]
+[[Category: McGeary RP]]
-[[Category: Schembri, M A]]
+[[Category: Patel KM]]
-[[Category: Schenk, G]]
+[[Category: Schembri MA]]
-[[Category: You, L]]
+[[Category: Schenk G]]
-[[Category: Zheng, S]]
+[[Category: You L]]
-[[Category: Inhibitor]]
+[[Category: Zheng S]]
-[[Category: Isomerase]]
-[[Category: Oxidoreductase]]