6ndr: Difference between revisions

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New page: ==Crystal structure of dTDP-6-deoxy-D-glucose-3,5-epimerase RmlC from Legionella pneumophila Philadelphia 1 in complex with dTDP-4-KETO-L-RHAMNOSE== <StructureSection load='6ndr' size='34...
 
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==Crystal structure of dTDP-6-deoxy-D-glucose-3,5-epimerase RmlC from Legionella pneumophila Philadelphia 1 in complex with dTDP-4-KETO-L-RHAMNOSE==
==Crystal structure of dTDP-6-deoxy-D-glucose-3,5-epimerase RmlC from Legionella pneumophila Philadelphia 1 in complex with dTDP-4-KETO-L-RHAMNOSE==
<StructureSection load='6ndr' size='340' side='right' caption='[[6ndr]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
<StructureSection load='6ndr' size='340' side='right'caption='[[6ndr]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[6ndr]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NDR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6NDR FirstGlance]. <br>
<table><tr><td colspan='2'>[[6ndr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 Legionella pneumophila subsp. pneumophila str. Philadelphia 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NDR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6NDR FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TDO:DTDP-4-KETO-L-RHAMNOSE'>TDO</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ndr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ndr OCA], [http://pdbe.org/6ndr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ndr RCSB], [http://www.ebi.ac.uk/pdbsum/6ndr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ndr ProSAT]</span></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TDO:DTDP-4-KETO-L-RHAMNOSE'>TDO</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ndr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ndr OCA], [https://pdbe.org/6ndr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ndr RCSB], [https://www.ebi.ac.uk/pdbsum/6ndr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ndr ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/Q5ZXH5_LEGPH Q5ZXH5_LEGPH]] Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose.[RuleBase:RU364069]  
[https://www.uniprot.org/uniprot/Q5ZXH5_LEGPH Q5ZXH5_LEGPH] Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose.[RuleBase:RU364069]
 
==See Also==
*[[RmlC|RmlC]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Structural genomic]]
[[Category: Large Structures]]
[[Category: 5-epimerase]]
[[Category: Legionella pneumophila subsp. pneumophila str. Philadelphia 1]]
[[Category: Dtdp-4-dehydrorhamnose 3]]
[[Category: Dtdp-6-deoxy-d-glucose-3]]
[[Category: Legionella pneumophila]]
[[Category: Lpg0756]]
[[Category: Rmlc]]
[[Category: Ssgcid]]
[[Category: Sugar binding protein]]

Latest revision as of 09:51, 11 October 2023

Crystal structure of dTDP-6-deoxy-D-glucose-3,5-epimerase RmlC from Legionella pneumophila Philadelphia 1 in complex with dTDP-4-KETO-L-RHAMNOSECrystal structure of dTDP-6-deoxy-D-glucose-3,5-epimerase RmlC from Legionella pneumophila Philadelphia 1 in complex with dTDP-4-KETO-L-RHAMNOSE

Structural highlights

6ndr is a 2 chain structure with sequence from Legionella pneumophila subsp. pneumophila str. Philadelphia 1. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.6Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q5ZXH5_LEGPH Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose.[RuleBase:RU364069]

See Also

6ndr, resolution 1.60Å

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