3c2q: Difference between revisions

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[[Image:3c2q.jpg|left|200px]]


{{Structure
==Crystal structure of conserved putative LOR/SDH protein from Methanococcus maripaludis S2==
|PDB= 3c2q |SIZE=350|CAPTION= <scene name='initialview01'>3c2q</scene>, resolution 2.00&Aring;
<StructureSection load='3c2q' size='340' side='right'caption='[[3c2q]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
|SITE= <scene name='pdbsite=AC1:Ni+Binding+Site+For+Residue+A+500'>AC1</scene>, <scene name='pdbsite=AC2:Imd+Binding+Site+For+Residue+A+501'>AC2</scene>, <scene name='pdbsite=AC3:Imd+Binding+Site+For+Residue+B+502'>AC3</scene>, <scene name='pdbsite=AC4:Imd+Binding+Site+For+Residue+A+502'>AC4</scene> and <scene name='pdbsite=AC5:Imd+Binding+Site+For+Residue+B+503'>AC5</scene>
== Structural highlights ==
|LIGAND= <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>
<table><tr><td colspan='2'>[[3c2q]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanococcus_maripaludis_S2 Methanococcus maripaludis S2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C2Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C2Q FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
|GENE= MMP1218, gi:45047647 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=267377 Methanococcus maripaludis S2])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
|DOMAIN=
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c2q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c2q OCA], [https://pdbe.org/3c2q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c2q RCSB], [https://www.ebi.ac.uk/pdbsum/3c2q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c2q ProSAT], [https://www.topsan.org/Proteins/MCSG/3c2q TOPSAN]</span></td></tr>
|RELATEDENTRY=
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3c2q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c2q OCA], [http://www.ebi.ac.uk/pdbsum/3c2q PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3c2q RCSB]</span>
== Function ==
}}
[https://www.uniprot.org/uniprot/Q6LXX7_METMP Q6LXX7_METMP]
 
== Evolutionary Conservation ==
'''Crystal structure of conserved putative LOR/SDH protein from Methanococcus maripaludis S2'''
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
 
  <jmolCheckbox>
==About this Structure==
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c2/3c2q_consurf.spt"</scriptWhenChecked>
3C2Q is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Methanococcus_maripaludis_s2 Methanococcus maripaludis s2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C2Q OCA].  
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Methanococcus maripaludis s2]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Single protein]]
  </jmolCheckbox>
[[Category: Conrad, B.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c2q ConSurf].
[[Category: Duke, N.]]
<div style="clear:both"></div>
[[Category: Gu, M.]]
__TOC__
[[Category: Joachimiak, A.]]
</StructureSection>
[[Category: MCSG, Midwest Center for Structural Genomics.]]
[[Category: Large Structures]]
[[Category: Mulligan, R.]]
[[Category: Methanococcus maripaludis S2]]
[[Category: mcsg]]
[[Category: Conrad B]]
[[Category: midwest center for structural genomic]]
[[Category: Duke N]]
[[Category: protein structure initiative]]
[[Category: Gu M]]
[[Category: psi-2]]
[[Category: Joachimiak A]]
[[Category: putative lor/sdh]]
[[Category: Mulligan R]]
[[Category: structural genomic]]
[[Category: unknown function]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:30:19 2008''

Latest revision as of 11:51, 30 October 2024

Crystal structure of conserved putative LOR/SDH protein from Methanococcus maripaludis S2Crystal structure of conserved putative LOR/SDH protein from Methanococcus maripaludis S2

Structural highlights

3c2q is a 2 chain structure with sequence from Methanococcus maripaludis S2. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q6LXX7_METMP

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3c2q, resolution 2.00Å

Drag the structure with the mouse to rotate

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OCA
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