3dpj: Difference between revisions

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OCA

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 ==The crystal structure of a TetR transcription regulator from Silicibacter pomeroyi DSS==
-<StructureSection load='3dpj' size='340' side='right' caption='[[3dpj]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+<StructureSection load='3dpj' size='340' side='right'caption='[[3dpj]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3dpj]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_700808 Atcc 700808]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DPJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DPJ FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3dpj]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruegeria_pomeroyi Ruegeria pomeroyi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DPJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DPJ FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SPO1902 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=89184 ATCC 700808])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dpj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dpj OCA], [https://pdbe.org/3dpj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dpj RCSB], [https://www.ebi.ac.uk/pdbsum/3dpj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dpj ProSAT], [https://www.topsan.org/Proteins/MCSG/3dpj TOPSAN]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dpj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dpj OCA], [http://pdbe.org/3dpj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dpj RCSB], [http://www.ebi.ac.uk/pdbsum/3dpj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3dpj ProSAT], [http://www.topsan.org/Proteins/MCSG/3dpj TOPSAN]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q5LS67_RUEPO Q5LS67_RUEPO]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 14: / Line 15: @@
    <jmolCheckbox>
      <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dp/3dpj_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
 </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dpj ConSurf].
 <div style="clear:both"></div>
+==See Also==
+*[[Tetracycline repressor protein 3D structures|Tetracycline repressor protein 3D structures]]
 __TOC__
 </StructureSection>
-[[Category: Atcc 700808]]
+[[Category: Large Structures]]
-[[Category: Freeman, L]]
+[[Category: Ruegeria pomeroyi]]
-[[Category: Joachimiak, A]]
+[[Category: Freeman L]]
-[[Category: Li, H]]
+[[Category: Joachimiak A]]
-[[Category: Structural genomic]]
+[[Category: Li H]]
-[[Category: Tan, K]]
+[[Category: Tan K]]
-[[Category: Apc88616]]
-[[Category: Dna binding protein]]
-[[Category: Dna-binding]]
-[[Category: Mcsg]]
-[[Category: PSI, Protein structure initiative]]
-[[Category: Silicibacter pomeroyi dss]]
-[[Category: Tetr]]
-[[Category: Transcription]]
-[[Category: Transcription regulation]]