3d8u: Difference between revisions

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==The crystal structure of a PurR family transcriptional regulator from Vibrio parahaemolyticus RIMD 2210633==
==The crystal structure of a PurR family transcriptional regulator from Vibrio parahaemolyticus RIMD 2210633==
<StructureSection load='3d8u' size='340' side='right' caption='[[3d8u]], [[Resolution|resolution]] 2.88&Aring;' scene=''>
<StructureSection load='3d8u' size='340' side='right'caption='[[3d8u]], [[Resolution|resolution]] 2.88&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3d8u]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"oceanomonas_parahaemolytica"_(fujino_et_al._1951)_miyamoto_et_al._1961 "oceanomonas parahaemolytica" (fujino et al. 1951) miyamoto et al. 1961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D8U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3D8U FirstGlance]. <br>
<table><tr><td colspan='2'>[[3d8u]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D8U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D8U FirstGlance]. <br>
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.88&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VPA0232 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=670 "Oceanomonas parahaemolytica" (Fujino et al. 1951) Miyamoto et al. 1961])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3d8u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d8u OCA], [http://pdbe.org/3d8u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3d8u RCSB], [http://www.ebi.ac.uk/pdbsum/3d8u PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3d8u ProSAT], [http://www.topsan.org/Proteins/MCSG/3d8u TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d8u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d8u OCA], [https://pdbe.org/3d8u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d8u RCSB], [https://www.ebi.ac.uk/pdbsum/3d8u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d8u ProSAT], [https://www.topsan.org/Proteins/MCSG/3d8u TOPSAN]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
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   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d8/3d8u_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d8/3d8u_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Hatzos, C]]
[[Category: Large Structures]]
[[Category: Joachimiak, A]]
[[Category: Vibrio parahaemolyticus]]
[[Category: Structural genomic]]
[[Category: Hatzos C]]
[[Category: Moy, S]]
[[Category: Joachimiak A]]
[[Category: Tan, K]]
[[Category: Moy S]]
[[Category: Apc91343 1]]
[[Category: Tan K]]
[[Category: Dna-binding]]
[[Category: Mcsg]]
[[Category: PSI, Protein structure initiative]]
[[Category: Purr]]
[[Category: Transcription]]
[[Category: Transcription regulation]]
[[Category: Transcription regulator]]
[[Category: Transcriptional regulator]]
[[Category: Vibrio parahaemolyticus rimd 2210633]]

Latest revision as of 04:42, 21 November 2024

The crystal structure of a PurR family transcriptional regulator from Vibrio parahaemolyticus RIMD 2210633The crystal structure of a PurR family transcriptional regulator from Vibrio parahaemolyticus RIMD 2210633

Structural highlights

3d8u is a 2 chain structure with sequence from Vibrio parahaemolyticus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.88Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3d8u, resolution 2.88Å

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OCA
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