3dsn: Difference between revisions

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 ==Crystal structure of the complex of the Caf1M chaperone with the mini-fiber of two Caf1 subunits (Caf1:Caf1), carrying the Thr7Phe mutation in the Gd donor strand==
-<StructureSection load='3dsn' size='340' side='right' caption='[[3dsn]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
+<StructureSection load='3dsn' size='340' side='right'caption='[[3dsn]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3dsn]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_pestis"_(lehmann_and_neumann_1896)_migula_1900 "bacillus pestis" (lehmann and neumann 1896) migula 1900]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DSN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DSN FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3dsn]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DSN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DSN FirstGlance]. <br>
-</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1z9s|1z9s]], [[1p5u|1p5u]], [[3dos|3dos]], [[3dpb|3dpb]]</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">caf1M, YPMT1.82, y5194, y1098, YP_pMT084 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=632 "Bacillus pestis" (Lehmann and Neumann 1896) Migula 1900]), caf1, YPMT1.84, y5196, y1100, YP_pMT082 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=632 "Bacillus pestis" (Lehmann and Neumann 1896) Migula 1900])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dsn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dsn OCA], [https://pdbe.org/3dsn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dsn RCSB], [https://www.ebi.ac.uk/pdbsum/3dsn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dsn ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dsn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dsn OCA], [http://pdbe.org/3dsn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dsn RCSB], [http://www.ebi.ac.uk/pdbsum/3dsn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3dsn ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/CAF1M_YERPE CAF1M_YERPE]] Has a stimulatory role for the envelope antigen F1 secretion. It seems to interact with the subunit polypeptide and to prevent it from digestion by a protease.
+[https://www.uniprot.org/uniprot/CAF1M_YERPE CAF1M_YERPE] Has a stimulatory role for the envelope antigen F1 secretion. It seems to interact with the subunit polypeptide and to prevent it from digestion by a protease.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 15: / Line 14: @@
    <jmolCheckbox>
      <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ds/3dsn_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
@@ Line 22: / Line 21: @@
 __TOC__
 </StructureSection>
-[[Category: Fooks, L J]]
+[[Category: Large Structures]]
-[[Category: Knight, S D]]
+[[Category: Yersinia pestis]]
-[[Category: MacIntyre, S]]
+[[Category: Fooks LJ]]
-[[Category: Moslehi-Mohebi, E]]
+[[Category: Knight SD]]
-[[Category: Tischenko, V]]
+[[Category: MacIntyre S]]
-[[Category: Yu, X]]
+[[Category: Moslehi-Mohebi E]]
-[[Category: Zavialov, A V]]
+[[Category: Tischenko V]]
-[[Category: Beta barrel]]
+[[Category: Yu X]]
-[[Category: Capsule]]
+[[Category: Zavialov AV]]
-[[Category: Chaperone]]
-[[Category: Donor strand complementation]]
-[[Category: Fimbriae]]
-[[Category: Fimbrial subunit]]
-[[Category: Immunoglobulin domain]]
-[[Category: Periplasm]]
-[[Category: Plasmid]]
-[[Category: Protein-protein complex]]
-[[Category: Secreted]]