3c12: Difference between revisions

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 ==Crystal Structure of FlgD from Xanthomonas campestris: Insights into the Hook Capping Essential for Flagellar Assembly==
-<StructureSection load='3c12' size='340' side='right' caption='[[3c12]], [[Resolution|resolution]] 2.51&Aring;' scene=''>
+<StructureSection load='3c12' size='340' side='right'caption='[[3c12]], [[Resolution|resolution]] 2.51&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3c12]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Xance Xance]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C12 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3C12 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3c12]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Xanthomonas_campestris_pv._campestris Xanthomonas campestris pv. campestris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C12 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C12 FirstGlance]. <br>
-</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3c12 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c12 OCA], [http://pdbe.org/3c12 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3c12 RCSB], [http://www.ebi.ac.uk/pdbsum/3c12 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3c12 ProSAT]</span></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.51&#8491;</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c12 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c12 OCA], [https://pdbe.org/3c12 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c12 RCSB], [https://www.ebi.ac.uk/pdbsum/3c12 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c12 ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q8P9B5_XANCP Q8P9B5_XANCP]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 16: / Line 19: @@
 </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c12 ConSurf].
 <div style="clear:both"></div>
-<div style="background-color:#fffaf0;">
-== Publication Abstract from PubMed ==
-The crystal structure of the C-terminal domain of a hook-capping protein FlgD from the plant pathogen Xanthomonas campestris (Xc) has been determined to a resolution of ca 2.5 A using X-ray crystallography. The monomer of whole FlgD comprises 221 amino acids with a molecular mass of 22.7 kDa, but the flexible N-terminus is cleaved for up to 75 residues during crystallization. The final structure of the C-terminal domain reveals a novel hybrid comprising a tudor-like domain interdigitated with a fibronectin type III domain. The C-terminal domain of XcFlgD forms three types of dimers in the crystal. In agreement with this, analytical ultracentrifugation and gel filtration experiments reveal that they form a stable dimer in solution. From these results, we propose that the Xc flagellar hook cap protein FlgD comprises two individual domains, a flexible N-terminal domain that cannot be detected in the current study and a stable C-terminal domain that forms a stable dimer.
-Crystal structure of the C-terminal domain of a flagellar hook-capping protein from Xanthomonas campestris.,Kuo WT, Chin KH, Lo WT, Wang AH, Chou SH J Mol Biol. 2008 Aug 1;381(1):189-99. Epub 2008 Jun 7. PMID:18599076<ref>PMID:18599076</ref>
+==See Also==
+*[[Flagellar protein 3D structures|Flagellar protein 3D structures]]
-From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-</div>
-<div class="pdbe-citations 3c12" style="background-color:#fffaf0;"></div>
-== References ==
-<references/>
 __TOC__
 </StructureSection>
-[[Category: Xance]]
+[[Category: Large Structures]]
-[[Category: Chin, K H]]
+[[Category: Xanthomonas campestris pv. campestris]]
-[[Category: Chou, S H]]
+[[Category: Chin K-H]]
-[[Category: Kuo, W T]]
+[[Category: Chou S-H]]
-[[Category: Lo, W T]]
+[[Category: Kuo W-T]]
-[[Category: Biosynthetic protein]]
+[[Category: Lo W-T]]
-[[Category: Flagellar biogenesis]]
-[[Category: Flagellum]]
-[[Category: Flgd]]
-[[Category: Fn-iii domain]]
-[[Category: Hook capping]]
-[[Category: Ig-like domain]]
-[[Category: Tudor-like domain]]
-[[Category: Xanthomonas campestri]]