6mlk: Difference between revisions
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==Structure of Thioesterase from DEBS with a thioesterase-specific antibody== | ==Structure of Thioesterase from DEBS with a thioesterase-specific antibody== | ||
<StructureSection load='6mlk' size='340' side='right' caption='[[6mlk]], [[Resolution|resolution]] 2.45Å' scene=''> | <StructureSection load='6mlk' size='340' side='right'caption='[[6mlk]], [[Resolution|resolution]] 2.45Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[6mlk]] is a 3 chain structure with sequence from [ | <table><tr><td colspan='2'>[[6mlk]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Saccharopolyspora_erythraea Saccharopolyspora erythraea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6MLK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6MLK FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.45Å</td></tr> | ||
<tr id=' | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6mlk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6mlk OCA], [https://pdbe.org/6mlk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6mlk RCSB], [https://www.ebi.ac.uk/pdbsum/6mlk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6mlk ProSAT]</span></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | |||
</table> | </table> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
| Line 18: | Line 17: | ||
</div> | </div> | ||
<div class="pdbe-citations 6mlk" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 6mlk" style="background-color:#fffaf0;"></div> | ||
==See Also== | |||
*[[Antibody 3D structures|Antibody 3D structures]] | |||
*[[Monoclonal Antibodies 3D structures|Monoclonal Antibodies 3D structures]] | |||
*[[6-deoxyerythronolide B synthase 3D structures|6-deoxyerythronolide B synthase 3D structures]] | |||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Homo sapiens]] | ||
[[Category: | [[Category: Large Structures]] | ||
[[Category: | [[Category: Saccharopolyspora erythraea]] | ||
[[Category: | [[Category: Khosla C]] | ||
[[Category: | [[Category: Li X]] | ||
[[Category: | [[Category: Mathews II]] | ||
Latest revision as of 11:08, 17 October 2024
Structure of Thioesterase from DEBS with a thioesterase-specific antibodyStructure of Thioesterase from DEBS with a thioesterase-specific antibody
Structural highlights
Publication Abstract from PubMedAssembly line polyketide synthases (PKSs) are large multimodular enzymes responsible for the biosynthesis of diverse antibiotics in bacteria. Structural and mechanistic analysis of these megasynthases can benefit from the discovery of reagents that recognize individual domains or linkers in a site-specific manner. Monoclonal antibodies have not only proven themselves as premier tools in analogous applications, but they also have the added benefit of constraining the conformational flexibility of their targets in unpredictable but often useful ways. Here we have exploited a library based on the naive human antibody repertoire to discover a Fab (3A6) that recognizes the terminal thioesterase (TE) domain of the 6-deoxyerythronolide B synthase with high specificity. Biochemical assays were used to verify that 3A6 binding does not inhibit enzyme turnover. The co-crystal structure of the TE-3A6 complex was solved at 2.45 A resolution, resulting in atomic characterization of this protein-protein recognition mechanism. Fab binding had minimal effects on structural integrity of the TE. In turn, these insights were used to interrogate via small-angle X-ray scattering the solution-phase conformation of 3A6 complexed to a catalytically competent PKS module and bimodule. Altogether, we have developed a high affinity monoclonal antibody tool that recognizes the TE domain of the 6-deoxyerythronolide B synthase while maintaining its native function. Discovery and characterization of a thioesterase-specific monoclonal antibody that recognizes the 6-deoxyerythronolide B synthase.,Li X, Sevillano N, La Greca F, Hsu J, Mathews II, Matsui T, Craik CS, Khosla C Biochemistry. 2018 Oct 5. doi: 10.1021/acs.biochem.8b00886. PMID:30289692[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See Also
References
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