6io1: Difference between revisions
Jump to navigation
Jump to search
New page: '''Unreleased structure''' The entry 6io1 is ON HOLD Authors: Park, H.H., Kwon, S. Description: Crystal structure of a novel thermostable (S)-enantioselective omega-transaminase from T... |
No edit summary |
||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
==Crystal structure of a novel thermostable (S)-enantioselective omega-transaminase from Thermomicrobium roseum== | |||
<StructureSection load='6io1' size='340' side='right'caption='[[6io1]], [[Resolution|resolution]] 1.80Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[6io1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermomicrobium_roseum_DSM_5159 Thermomicrobium roseum DSM 5159]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IO1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6IO1 FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.803Å</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PMP:4-DEOXY-4-AMINOPYRIDOXAL-5-PHOSPHATE'>PMP</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6io1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6io1 OCA], [https://pdbe.org/6io1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6io1 RCSB], [https://www.ebi.ac.uk/pdbsum/6io1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6io1 ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/B9L0K9_THERP B9L0K9_THERP] | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
Transaminases catalyze the reversible transfer reaction of an amino group between a primary amine and an alpha-keto acid, utilizing pyridoxal 5'-phosphate as a cofactor. omega-transaminases (omegaTAs) recognize an amino group linked to a non-alpha carbon of amine substrates. Recently, a novel (S)-enantioselective omegaTA from Thermomicrobium roseum (Tr-omegaTA) was identified and its enzymatic activity reported. However, the detailed mechanism of (S)-enantioselective substrate recognition remained unclear. In this study, we determined the crystal structure of Tr-omegaTA at 1.8 A resolution to elucidate the mechanism underlying Tr-omegaTA substrate (S)-enantioselectivity. A structural analysis of Tr-omegaTA along with molecular docking simulations revealed that two pockets at the active site tightly restrict the size and orientation of functional groups of substrate candidates. Based on the structural information and docking simulation results, we propose a comprehensive catalytic mechanism of Tr-omegaTA. The present study thus provides structural and functional insights into the (S)-enantioselectivity of Tr-omegaTA. | |||
Structural basis of substrate recognition by a novel thermostable (S)-enantioselective omega-transaminase from Thermomicrobium roseum.,Kwon S, Lee JH, Kim CM, Jang H, Yun H, Jeon JH, So I, Park HH Sci Rep. 2019 May 6;9(1):6958. doi: 10.1038/s41598-019-43490-2. PMID:31061438<ref>PMID:31061438</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
[[Category: | </div> | ||
[[Category: Kwon | <div class="pdbe-citations 6io1" style="background-color:#fffaf0;"></div> | ||
[[Category: Park | |||
==See Also== | |||
*[[Aminotransferase 3D structures|Aminotransferase 3D structures]] | |||
== References == | |||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Large Structures]] | |||
[[Category: Thermomicrobium roseum DSM 5159]] | |||
[[Category: Kwon S]] | |||
[[Category: Park HH]] | |||