2rn8: Difference between revisions

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-[[Image:2rn8.jpg|left|200px]]
- {{Structure
+==NMR structure note: murine Itk SH3 domain==
-|PDB= 2rn8 |SIZE=350|CAPTION= <scene name='initialview01'>2rn8</scene>
+<StructureSection load='2rn8' size='340' side='right'caption='[[2rn8]]' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND=
+<table><tr><td colspan='2'>[[2rn8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RN8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RN8 FirstGlance]. <br>
-|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Non-specific_protein-tyrosine_kinase Non-specific protein-tyrosine kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.10.2 2.7.10.2] </span>
+</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rn8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rn8 OCA], [https://pdbe.org/2rn8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rn8 RCSB], [https://www.ebi.ac.uk/pdbsum/2rn8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rn8 ProSAT]</span></td></tr>
-|GENE= Itk, Emt, Tlk, Tsk ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 Mus musculus])
+</table>
-|DOMAIN=
+== Function ==
-|RELATEDENTRY=[[2rna|2RNA]]
+[https://www.uniprot.org/uniprot/ITK_MOUSE ITK_MOUSE] Tyrosine kinase that plays an essential role in regulation of the adaptive immune response. Regulates the development, function and differentiation of conventional T-cells and nonconventional NKT-cells. When antigen presenting cells (APC) activate T-cell receptor (TCR), a series of phosphorylation lead to the recruitment of ITK to the cell membrane, in the vicinity of the stimulated TCR receptor, where it is phosphorylated by LCK. Phosphorylation leads to ITK autophosphorylation and full activation. Once activated, phosphorylates PLCG1, leading to the activation of this lipase and subsequent cleavage of its substrates. In turn, the endoplasmic reticulum releases calcium in the cytoplasm and the nuclear activator of activated T-cells (NFAT) translocates into the nucleus to perform its transcriptional duty. Phosphorylates 2 essential adapter proteins: the linker for activation of T-cells/LAT protein and LCP2. Then, a large number of signaling molecules such as VAV1 are recruited and ultimately lead to lymphokine production, T-cell proliferation and differentiation.<ref>PMID:21036902</ref>
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rn8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rn8 OCA], [http://www.ebi.ac.uk/pdbsum/2rn8 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2rn8 RCSB]</span>
+== Evolutionary Conservation ==
-}}
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rn/2rn8_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rn8 ConSurf].
+<div style="clear:both"></div>
-'''NMR structure note: murine Itk SH3 domain'''
+==See Also==
+*[[Tyrosine kinase 3D structures|Tyrosine kinase 3D structures]]
+== References ==
-==About this Structure==
+<references/>
-RN8 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RN8 OCA].
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Mus musculus]]
-[[Category: Non-specific protein-tyrosine kinase]]
+[[Category: Severin AJ]]
-[[Category: Single protein]]
-[[Category: Severin, A J.]]
-[[Category: 310 helix]]
-[[Category: atp-binding]]
-[[Category: beta barrel]]
-[[Category: itk]]
-[[Category: kinase]]
-[[Category: membrane]]
-[[Category: metal-binding]]
-[[Category: nucleotide-binding]]
-[[Category: phosphoprotein]]
-[[Category: regulatory]]
-[[Category: sh2 domain]]
-[[Category: sh3]]
-[[Category: sh3 domain]]
-[[Category: transferase]]
-[[Category: tyrosine-protein kinase]]
-[[Category: zinc]]
-[[Category: zinc-finger]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:02:15 2008''