2qma: Difference between revisions

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[[Image:2qma.jpg|left|200px]]


{{Structure
==Crystal structure of glutamate decarboxylase domain of diaminobutyrate-pyruvate transaminase and L-2,4-diaminobutyrate decarboxylase from Vibrio parahaemolyticus==
|PDB= 2qma |SIZE=350|CAPTION= <scene name='initialview01'>2qma</scene>, resolution 1.81&Aring;
<StructureSection load='2qma' size='340' side='right'caption='[[2qma]], [[Resolution|resolution]] 1.81&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
<table><tr><td colspan='2'>[[2qma]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_RIMD_2210633 Vibrio parahaemolyticus RIMD 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QMA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QMA FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.81&#8491;</td></tr>
|GENE= VP1942 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=223926 Vibrio parahaemolyticus RIMD 2210633])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00282 Pyridoxal_deC], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG0076 GadB]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qma FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qma OCA], [https://pdbe.org/2qma PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qma RCSB], [https://www.ebi.ac.uk/pdbsum/2qma PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qma ProSAT], [https://www.topsan.org/Proteins/MCSG/2qma TOPSAN]</span></td></tr>
|RELATEDENTRY=
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2qma FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qma OCA], [http://www.ebi.ac.uk/pdbsum/2qma PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2qma RCSB]</span>
== Function ==
}}
[https://www.uniprot.org/uniprot/Q87NC6_VIBPA Q87NC6_VIBPA]
 
== Evolutionary Conservation ==
'''Crystal structure of glutamate decarboxylase domain of diaminobutyrate-pyruvate transaminase and L-2,4-diaminobutyrate decarboxylase from Vibrio parahaemolyticus'''
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
 
  <jmolCheckbox>
==About this Structure==
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qm/2qma_consurf.spt"</scriptWhenChecked>
2QMA is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_rimd_2210633 Vibrio parahaemolyticus rimd 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QMA OCA].  
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Single protein]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Vibrio parahaemolyticus rimd 2210633]]
  </jmolCheckbox>
[[Category: Gu, M.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qma ConSurf].
[[Category: Joachimiak, A.]]
<div style="clear:both"></div>
[[Category: MCSG, Midwest Center for Structural Genomics.]]
__TOC__
[[Category: Osipiuk, J.]]
</StructureSection>
[[Category: Sather, A.]]
[[Category: Large Structures]]
[[Category: aminotransferase]]
[[Category: Vibrio parahaemolyticus RIMD 2210633]]
[[Category: apc91511 1]]
[[Category: Gu M]]
[[Category: glutamate decarboxylase]]
[[Category: Joachimiak A]]
[[Category: mcsg]]
[[Category: Osipiuk J]]
[[Category: midwest center for structural genomic]]
[[Category: Sather A]]
[[Category: protein structure initiative]]
[[Category: psi-2]]
[[Category: pyridoxal phosphate]]
[[Category: pyruvate]]
[[Category: structural genomic]]
[[Category: transferase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:50:49 2008''

Latest revision as of 08:28, 17 October 2024

Crystal structure of glutamate decarboxylase domain of diaminobutyrate-pyruvate transaminase and L-2,4-diaminobutyrate decarboxylase from Vibrio parahaemolyticusCrystal structure of glutamate decarboxylase domain of diaminobutyrate-pyruvate transaminase and L-2,4-diaminobutyrate decarboxylase from Vibrio parahaemolyticus

Structural highlights

2qma is a 2 chain structure with sequence from Vibrio parahaemolyticus RIMD 2210633. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.81Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q87NC6_VIBPA

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2qma, resolution 1.81Å

Drag the structure with the mouse to rotate

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OCA
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