2vrt: Difference between revisions

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 ==Crystal Structure of E. coli RNase E possessing M1 RNA fragments - Catalytic Domain==
-<StructureSection load='2vrt' size='340' side='right' caption='[[2vrt]], [[Resolution|resolution]] 3.50&Aring;' scene=''>
+<StructureSection load='2vrt' size='340' side='right'caption='[[2vrt]], [[Resolution|resolution]] 3.50&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2vrt]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VRT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VRT FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2vrt]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VRT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VRT FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.5&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2bx2|2bx2]], [[2c0b|2c0b]], [[2vmk|2vmk]], [[2c4r|2c4r]], [[1slj|1slj]], [[1sn8|1sn8]], [[2fym|2fym]], [[1smx|1smx]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vrt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vrt OCA], [http://pdbe.org/2vrt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vrt RCSB], [http://www.ebi.ac.uk/pdbsum/2vrt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vrt ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vrt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vrt OCA], [https://pdbe.org/2vrt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vrt RCSB], [https://www.ebi.ac.uk/pdbsum/2vrt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vrt ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/RNE_ECOLI RNE_ECOLI]] Matures 5S rRNA from its precursors from all the rRNA genes. It also cleaves RNA I, a molecule that controls the replication of colE1 plasmid DNA. It is the major endoribonuclease participating in mRNA turnover in E.coli. It initiates the decay of RNAs by cutting them internally near their 5'-end. It is able to remove poly(A) tails by an endonucleolytic process.
+[https://www.uniprot.org/uniprot/RNE_ECOLI RNE_ECOLI] Matures 5S rRNA from its precursors from all the rRNA genes. It also cleaves RNA I, a molecule that controls the replication of colE1 plasmid DNA. It is the major endoribonuclease participating in mRNA turnover in E.coli. It initiates the decay of RNAs by cutting them internally near their 5'-end. It is able to remove poly(A) tails by an endonucleolytic process.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 31: / Line 31: @@
 ==See Also==
-*[[Ribonuclease|Ribonuclease]]
+*[[Ribonuclease 3D structures|Ribonuclease 3D structures]]
-*[[Temp|Temp]]
-*[[Temperature value vs. resolution|Temperature value vs. resolution]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Bacillus coli migula 1895]]
+[[Category: Escherichia coli]]
-[[Category: Callaghan, A J]]
+[[Category: Large Structures]]
-[[Category: Garman, E F]]
+[[Category: Callaghan AJ]]
-[[Category: Koslover, D J]]
+[[Category: Garman EF]]
-[[Category: Luisi, B F]]
+[[Category: Koslover DJ]]
-[[Category: Marcaida, M J]]
+[[Category: Luisi BF]]
-[[Category: Martick, M]]
+[[Category: Marcaida MJ]]
-[[Category: Scott, W G]]
+[[Category: Martick M]]
-[[Category: Cytoplasm]]
+[[Category: Scott WG]]
-[[Category: Endonuclease]]
-[[Category: Hydrolase]]
-[[Category: M1 rna]]
-[[Category: Nuclease]]
-[[Category: Rna processing]]
-[[Category: Rna turnover]]
-[[Category: Rna-binding]]
-[[Category: Rnase p]]