2vu7: Difference between revisions

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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 ==Atomic resolution (1.08 A) structure of purified thaumatin I grown in sodium meso-tartrate at 4 C==
-<StructureSection load='2vu7' size='340' side='right' caption='[[2vu7]], [[Resolution|resolution]] 1.08&Aring;' scene=''>
+<StructureSection load='2vu7' size='340' side='right'caption='[[2vu7]], [[Resolution|resolution]] 1.08&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2vu7]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VU7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VU7 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2vu7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VU7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VU7 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SRT:S,R+MESO-TARTARIC+ACID'>SRT</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.08&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1thw|1thw]], [[1kwn|1kwn]], [[1rqw|1rqw]], [[1thv|1thv]], [[1lr2|1lr2]], [[2vi2|2vi2]], [[2vi1|2vi1]], [[1lxz|1lxz]], [[2blr|2blr]], [[2d8o|2d8o]], [[2vu6|2vu6]], [[2vi3|2vi3]], [[1thu|1thu]], [[2vhr|2vhr]], [[2a7i|2a7i]], [[1lr3|1lr3]], [[1thi|1thi]], [[1ly0|1ly0]], [[1pp3|1pp3]], [[2d8p|2d8p]], [[2vi4|2vi4]], [[2vhk|2vhk]], [[2blu|2blu]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SRT:S,R+MESO-TARTARIC+ACID'>SRT</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vu7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vu7 OCA], [http://pdbe.org/2vu7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vu7 RCSB], [http://www.ebi.ac.uk/pdbsum/2vu7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vu7 ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vu7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vu7 OCA], [https://pdbe.org/2vu7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vu7 RCSB], [https://www.ebi.ac.uk/pdbsum/2vu7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vu7 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/THM1_THADA THM1_THADA]] Taste-modifying protein; intensely sweet-tasting. It is 100000 times sweeter than sucrose on a molar basis.
+[https://www.uniprot.org/uniprot/THM1_THADA THM1_THADA] Taste-modifying protein; intensely sweet-tasting. It is 100000 times sweeter than sucrose on a molar basis.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 15: / Line 15: @@
    <jmolCheckbox>
      <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vu/2vu7_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
@@ Line 22: / Line 22: @@
 __TOC__
 </StructureSection>
-[[Category: Asherie, N]]
+[[Category: Large Structures]]
-[[Category: Ginsberg, C]]
+[[Category: Thaumatococcus daniellii]]
-[[Category: Jakoncic, J]]
+[[Category: Asherie N]]
-[[Category: Chirality]]
+[[Category: Ginsberg C]]
-[[Category: Crystallization]]
+[[Category: Jakoncic J]]
-[[Category: Cytoplasmic vesicle]]
-[[Category: Dl-tartaric acid]]
-[[Category: Microbatch]]
-[[Category: Plant protein]]
-[[Category: Sweet protein]]
-[[Category: Taste-modifying protein]]
-[[Category: Temperature]]