4rvy: Difference between revisions

<StructureSection load='4rvy' size='340' side='right'caption='[[4rvy]], [[Resolution|resolution]] 5.50&Aring;' scene=''>

<table><tr><td colspan='2'>[[4rvy]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermosynechococcus_vestitus_BP-1 Thermosynechococcus vestitus BP-1]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4q54 4q54]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RVY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4RVY FirstGlance]. <br>

</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 5.5&#8491;</td></tr>

<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=DGD:DIGALACTOSYL+DIACYL+GLYCEROL+(DGDG)'>DGD</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=LMG:1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE'>LMG</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=OEX:CA-MN4-O5+CLUSTER'>OEX</scene>, <scene name='pdbligand=PHO:PHEOPHYTIN+A'>PHO</scene>, <scene name='pdbligand=PL9:2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE'>PL9</scene>, <scene name='pdbligand=SQD:1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL'>SQD</scene></td></tr>

<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4rvy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4rvy OCA], [https://pdbe.org/4rvy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4rvy RCSB], [https://www.ebi.ac.uk/pdbsum/4rvy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4rvy ProSAT]</span></td></tr>

[https://www.uniprot.org/uniprot/PSBA1_THEVB PSBA1_THEVB] Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors.[HAMAP-Rule:MF_01379]<ref>PMID:20558739</ref> <ref>PMID:21367867</ref> <ref>PMID:25006873</ref>  

*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]

*[[Photosystem II 3D structures|Photosystem II 3D structures]]

[[Category: Large Structures]]

[[Category: Thermosynechococcus vestitus BP-1]]

[[Category: Aquila A]]

[[Category: Bari S]]

[[Category: Barty A]]

[[Category: Basu S]]

[[Category: Bergkamp JJ]]

[[Category: Beyerlein K]]

[[Category: Bogan MJ]]

[[Category: Boutet S]]

[[Category: Caleman C]]

[[Category: Chao T-C]]

[[Category: Chapman HN]]

[[Category: Cobb DE]]

[[Category: Conrad CE]]

[[Category: Davis KM]]

[[Category: Deponte D]]

[[Category: Doak RB]]

[[Category: Fleckenstein H]]

[[Category: Frank M]]

[[Category: Fromme P]]

[[Category: Fromme R]]

[[Category: Galli L]]

[[Category: Grotjohann I]]

[[Category: Hau-Riege SP]]

[[Category: Hunter M]]

[[Category: James D]]

[[Category: Kassemeyer S]]

[[Category: Kirian R]]

[[Category: Kupitz C]]

[[Category: Laksmono H]]

[[Category: Liang M]]

[[Category: Liu H]]

[[Category: Lomb L]]

[[Category: Marchesini S]]

[[Category: Martin AV]]

[[Category: Messerschmidt M]]

[[Category: Milathianaki D]]

[[Category: Moore AL]]

[[Category: Moore TA]]

[[Category: Nass K]]

[[Category: Pushkar Y]]

[[Category: Reeder B]]

[[Category: Rendek KN]]

[[Category: Ros A]]

[[Category: Roy-Chowdhury S]]

[[Category: Schmidt K]]

[[Category: Seibert M]]

[[Category: Shoeman RL]]

[[Category: Sierra RG]]

[[Category: Spence JCH]]

[[Category: Steinbrener J]]

[[Category: Stellato F]]

[[Category: Wang D]]

[[Category: Weierstall U]]

[[Category: White TA]]

[[Category: Williams GJ]]

[[Category: Yan L]]

[[Category: Yang J-H]]

[[Category: Yoon C]]

[[Category: Zatsepin N]]