6mdn: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
No edit summary
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:


==The 20S supercomplex engaging the SNAP-25 N-terminus (class 2)==
==The 20S supercomplex engaging the SNAP-25 N-terminus (class 2)==
<StructureSection load='6mdn' size='340' side='right' caption='[[6mdn]], [[Resolution|resolution]] 4.40&Aring;' scene=''>
<SX load='6mdn' size='340' side='right' viewer='molstar' caption='[[6mdn]], [[Resolution|resolution]] 4.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[6mdn]] is a 11 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6MDN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6MDN FirstGlance]. <br>
<table><tr><td colspan='2'>[[6mdn]] is a 11 chain structure with sequence from [https://en.wikipedia.org/wiki/Cricetulus_griseus Cricetulus griseus] and [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6MDN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6MDN FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 4.4&#8491;</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Vesicle-fusing_ATPase Vesicle-fusing ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.4.6 3.6.4.6] </span></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6mdn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6mdn OCA], [http://pdbe.org/6mdn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6mdn RCSB], [http://www.ebi.ac.uk/pdbsum/6mdn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6mdn ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6mdn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6mdn OCA], [https://pdbe.org/6mdn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6mdn RCSB], [https://www.ebi.ac.uk/pdbsum/6mdn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6mdn ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/VAMP2_RAT VAMP2_RAT]] Involved in the targeting and/or fusion of transport vesicles to their target membrane (By similarity). [[http://www.uniprot.org/uniprot/NSF_CRIGR NSF_CRIGR]] Required for vesicle-mediated transport. Catalyzes the fusion of transport vesicles within the Golgi cisternae. Is also required for transport from the endoplasmic reticulum to the Golgi stack. Seem to function as a fusion protein required for the delivery of cargo proteins to all compartments of the Golgi stack independent of vesicle origin. Interaction with AMPAR subunit GRIA2 leads to influence GRIA2 membrane cycling. [[http://www.uniprot.org/uniprot/STX1A_RAT STX1A_RAT]] Potentially involved in docking of synaptic vesicles at presynaptic active zones. May play a critical role in neurotransmitter exocytosis. May mediate Ca(2+)-regulation of exocytosis acrosomal reaction in sperm. [[http://www.uniprot.org/uniprot/SNP25_RAT SNP25_RAT]] t-SNARE involved in the molecular regulation of neurotransmitter release. May play an important role in the synaptic function of specific neuronal systems. Associates with proteins involved in vesicle docking and membrane fusion. Regulates plasma membrane recycling through its interaction with CENPF. [[http://www.uniprot.org/uniprot/SNAA_RAT SNAA_RAT]] Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus.
[https://www.uniprot.org/uniprot/NSF_CRIGR NSF_CRIGR] Required for vesicle-mediated transport. Catalyzes the fusion of transport vesicles within the Golgi cisternae. Is also required for transport from the endoplasmic reticulum to the Golgi stack. Seem to function as a fusion protein required for the delivery of cargo proteins to all compartments of the Golgi stack independent of vesicle origin. Interaction with AMPAR subunit GRIA2 leads to influence GRIA2 membrane cycling.
 
==See Also==
*[[ATPase 3D structures|ATPase 3D structures]]
*[[Synaptosomal-associated protein|Synaptosomal-associated protein]]
*[[Syntaxin 3D structures|Syntaxin 3D structures]]
*[[Vesicle-associated membrane protein|Vesicle-associated membrane protein]]
__TOC__
__TOC__
</StructureSection>
</SX>
[[Category: Vesicle-fusing ATPase]]
[[Category: Cricetulus griseus]]
[[Category: Brunger, A T]]
[[Category: Large Structures]]
[[Category: White, K I]]
[[Category: Rattus norvegicus]]
[[Category: Zhao, M]]
[[Category: Brunger AT]]
[[Category: Aaa]]
[[Category: White KI]]
[[Category: Atpase]]
[[Category: Zhao M]]
[[Category: Disassembly]]
[[Category: Exocytosis]]
[[Category: Hydrolase]]
[[Category: Membrane fusion]]
[[Category: Nsf]]
[[Category: Snap]]
[[Category: Snare]]
[[Category: Synapse]]

Latest revision as of 17:42, 13 March 2024

The 20S supercomplex engaging the SNAP-25 N-terminus (class 2)The 20S supercomplex engaging the SNAP-25 N-terminus (class 2)

6mdn, resolution 4.40Å

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA