2vae: Difference between revisions

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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 ==Fast maturing red fluorescent protein, DsRed.T4==
-<StructureSection load='2vae' size='340' side='right' caption='[[2vae]], [[Resolution|resolution]] 1.64&Aring;' scene=''>
+<StructureSection load='2vae' size='340' side='right'caption='[[2vae]], [[Resolution|resolution]] 1.64&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2vae]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Dissp Dissp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VAE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VAE FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2vae]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Discosoma_sp. Discosoma sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VAE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VAE FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.64&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRQ:[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC+ACID'>CRQ</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CRQ:[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC+ACID'>CRQ</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2vad|2vad]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vae FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vae OCA], [https://pdbe.org/2vae PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vae RCSB], [https://www.ebi.ac.uk/pdbsum/2vae PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vae ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vae FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vae OCA], [http://pdbe.org/2vae PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vae RCSB], [http://www.ebi.ac.uk/pdbsum/2vae PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vae ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/RFP_DISSP RFP_DISSP] Thought to play a role in photoprotection of the coral's resident symbiont microalgae's photosystems from photoinhibition caused by high light levels found near the surface of coral reefs. In deeper water, the fluorescence may be to convert blue light into longer wavelengths more suitable for use in photosynthesis by the microalgal symbionts.<ref>PMID:10504696</ref>
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
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    <jmolCheckbox>
      <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/va/2vae_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
@@ Line 30: / Line 31: @@
 ==See Also==
-*[[Green Fluorescent Protein|Green Fluorescent Protein]]
+*[[Green Fluorescent Protein 3D structures|Green Fluorescent Protein 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Dissp]]
+[[Category: Discosoma sp]]
-[[Category: Bevis, B]]
+[[Category: Large Structures]]
-[[Category: Downing, M E]]
+[[Category: Bevis B]]
-[[Category: Glick, B S]]
+[[Category: Downing ME]]
-[[Category: Keenan, R J]]
+[[Category: Glick BS]]
-[[Category: Khuong, N]]
+[[Category: Keenan RJ]]
-[[Category: Strack, R L]]
+[[Category: Khuong N]]
-[[Category: Strongin, D E]]
+[[Category: Strack RL]]
-[[Category: Sundaram, K]]
+[[Category: Strongin DE]]
-[[Category: Chromophore]]
+[[Category: Sundaram K]]
-[[Category: Dsred]]
-[[Category: Fast maturing]]
-[[Category: Fluorescent protein]]
-[[Category: Gfp-like]]
-[[Category: Luminescence]]
-[[Category: Photoprotein]]