2vbs: Difference between revisions

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 ==Riboflavin kinase Mj0056 from Methanocaldococcus jannaschii in complex with PO4==
-<StructureSection load='2vbs' size='340' side='right' caption='[[2vbs]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
+<StructureSection load='2vbs' size='340' side='right'caption='[[2vbs]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2vbs]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43067 Atcc 43067]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VBS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VBS FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2vbs]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VBS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VBS FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2p3m|2p3m]], [[2vbt|2vbt]], [[2vbv|2vbv]], [[2vbu|2vbu]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/CTP-dependent_riboflavin_kinase CTP-dependent riboflavin kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.161 2.7.1.161] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vbs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vbs OCA], [https://pdbe.org/2vbs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vbs RCSB], [https://www.ebi.ac.uk/pdbsum/2vbs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vbs ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vbs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vbs OCA], [http://pdbe.org/2vbs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vbs RCSB], [http://www.ebi.ac.uk/pdbsum/2vbs PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vbs ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/RIFK_METJA RIFK_METJA]] Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN). Can also utilize UTP as the phosphate donor, although less efficiently, and it is unclear if ATP and GTP can also serve as substrates (PubMed:18245297) or not (PubMed:18073108).<ref>PMID:18073108</ref> <ref>PMID:18245297</ref>
+[https://www.uniprot.org/uniprot/RIFK_METJA RIFK_METJA] Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN). Can also utilize UTP as the phosphate donor, although less efficiently, and it is unclear if ATP and GTP can also serve as substrates (PubMed:18245297) or not (PubMed:18073108).<ref>PMID:18073108</ref> <ref>PMID:18245297</ref>
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 34: / Line 33: @@
 __TOC__
 </StructureSection>
-[[Category: Atcc 43067]]
+[[Category: Large Structures]]
-[[Category: CTP-dependent riboflavin kinase]]
+[[Category: Methanocaldococcus jannaschii]]
-[[Category: Ammelburg, M]]
+[[Category: Ammelburg M]]
-[[Category: Djuranovic, S]]
+[[Category: Djuranovic S]]
-[[Category: Hartmann, M D]]
+[[Category: Hartmann MD]]
-[[Category: Lupas, A N]]
+[[Category: Lupas AN]]
-[[Category: Martin, J]]
+[[Category: Martin J]]
-[[Category: Zeth, K]]
+[[Category: Zeth K]]
-[[Category: Cradle-loop barrel]]
-[[Category: Ctp-dependent kinase]]
-[[Category: Fmn]]
-[[Category: Transferase]]