2p5y: Difference between revisions

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[[Image:2p5y.gif|left|200px]]


{{Structure
==Crystal structure of Thermus thermophilus HB8 UDP-glucose 4-epimerase complex with NAD==
|PDB= 2p5y |SIZE=350|CAPTION= <scene name='initialview01'>2p5y</scene>, resolution 1.920&Aring;
<StructureSection load='2p5y' size='340' side='right'caption='[[2p5y]], [[Resolution|resolution]] 1.92&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>
<table><tr><td colspan='2'>[[2p5y]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P5Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P5Y FirstGlance]. <br>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/UDP-glucose_4-epimerase UDP-glucose 4-epimerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.3.2 5.1.3.2] </span>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.92&#8491;</td></tr>
|GENE= TTHA0591 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=274 Thermus thermophilus])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK10675 PRK10675], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1087 GalE]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p5y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p5y OCA], [https://pdbe.org/2p5y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p5y RCSB], [https://www.ebi.ac.uk/pdbsum/2p5y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p5y ProSAT], [https://www.topsan.org/Proteins/RSGI/2p5y TOPSAN]</span></td></tr>
|RELATEDENTRY=
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p5y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p5y OCA], [http://www.ebi.ac.uk/pdbsum/2p5y PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2p5y RCSB]</span>
== Function ==
}}
[https://www.uniprot.org/uniprot/Q5SKQ2_THET8 Q5SKQ2_THET8]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p5/2p5y_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p5y ConSurf].
<div style="clear:both"></div>


'''Crystal structure of Thermus thermophilus HB8 UDP-glucose 4-epimerase complex with NAD'''
==See Also==
 
*[[UDP-galactose 4-epimerase|UDP-galactose 4-epimerase]]
 
__TOC__
==About this Structure==
</StructureSection>
2P5Y is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P5Y OCA].
[[Category: Large Structures]]
[[Category: Single protein]]
[[Category: Thermus thermophilus HB8]]
[[Category: Thermus thermophilus]]
[[Category: Chen L]]
[[Category: UDP-glucose 4-epimerase]]
[[Category: Chrzas J]]
[[Category: Chen, L.]]
[[Category: Ebihara A]]
[[Category: Chrzas, J.]]
[[Category: Fu Z-Q]]
[[Category: Ebihara, A.]]
[[Category: Kuramitsu S]]
[[Category: Fu, Z-Q.]]
[[Category: Rose JP]]
[[Category: Kuramitsu, S.]]
[[Category: Shinkai A]]
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
[[Category: Swindell JT]]
[[Category: Rose, J P.]]
[[Category: Wang B-C]]
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
[[Category: Yokoyama S]]
[[Category: Shinkai, A.]]
[[Category: Zhu J]]
[[Category: Swindell, J T.]]
[[Category: Wang, B-C.]]
[[Category: Yokoyama, S.]]
[[Category: Zhu, J.]]
[[Category: national project on protein structural and functional analyse]]
[[Category: nppsfa]]
[[Category: protein structure initiative]]
[[Category: psi]]
[[Category: riken structural genomics/proteomics initiative]]
[[Category: rsgi]]
[[Category: secsg]]
[[Category: southeast collaboratory for structural genomic]]
[[Category: structural genomic]]
[[Category: thermus thermophilus hb8]]
[[Category: ttha0591]]
[[Category: udp-glucose 4-epimerase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:30:18 2008''

Latest revision as of 13:55, 30 August 2023

Crystal structure of Thermus thermophilus HB8 UDP-glucose 4-epimerase complex with NADCrystal structure of Thermus thermophilus HB8 UDP-glucose 4-epimerase complex with NAD

Structural highlights

2p5y is a 1 chain structure with sequence from Thermus thermophilus HB8. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.92Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q5SKQ2_THET8

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2p5y, resolution 1.92Å

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