2ox4: Difference between revisions

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-[[Image:2ox4.jpg|left|200px]]
- {{Structure
+==Crystal structure of putative dehydratase from Zymomonas mobilis ZM4==
-|PDB= 2ox4 |SIZE=350|CAPTION= <scene name='initialview01'>2ox4</scene>, resolution 1.80&Aring;
+<StructureSection load='2ox4' size='340' side='right'caption='[[2ox4]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>
+<table><tr><td colspan='2'>[[2ox4]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Zymomonas_mobilis Zymomonas mobilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OX4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OX4 FirstGlance]. <br>
-|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Mandelate_racemase Mandelate racemase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.2.2 5.1.2.2] </span>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-|GENE= rspA, ZMO1264 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=542 Zymomonas mobilis])
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03317 NAAAR], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03316 MR_like]</span>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ox4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ox4 OCA], [https://pdbe.org/2ox4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ox4 RCSB], [https://www.ebi.ac.uk/pdbsum/2ox4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ox4 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2ox4 TOPSAN]</span></td></tr>
-|RELATEDENTRY=
+</table>
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ox4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ox4 OCA], [http://www.ebi.ac.uk/pdbsum/2ox4 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2ox4 RCSB]</span>
+== Function ==
-}}
+[https://www.uniprot.org/uniprot/Q5NN22_ZYMMO Q5NN22_ZYMMO]
+== Evolutionary Conservation ==
-'''Crystal structure of putative dehydratase from Zymomonas mobilis ZM4'''
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
-==About this Structure==
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ox/2ox4_consurf.spt"</scriptWhenChecked>
-OX4 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Zymomonas_mobilis Zymomonas mobilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OX4 OCA].
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Mandelate racemase]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Single protein]]
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ox4 ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Zymomonas mobilis]]
-[[Category: Almo, S C.]]
+[[Category: Almo SC]]
-[[Category: Bain, K.]]
+[[Category: Bain K]]
-[[Category: Burley, S K.]]
+[[Category: Burley SK]]
-[[Category: Freeman, J C.]]
+[[Category: Freeman JC]]
-[[Category: Gerlt, J.]]
+[[Category: Gerlt J]]
-[[Category: Gheyi, T.]]
+[[Category: Gheyi T]]
-[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+[[Category: Patskovsky Y]]
-[[Category: Patskovsky, Y.]]
+[[Category: Sauder JM]]
-[[Category: Sauder, J M.]]
+[[Category: Smith D]]
-[[Category: Smith, D.]]
+[[Category: Toro R]]
-[[Category: Toro, R.]]
+[[Category: Wasserman SR]]
-[[Category: Wasserman, S R.]]
-[[Category: dehydratase]]
-[[Category: enolase]]
-[[Category: new york structural genomics research consortium]]
-[[Category: new york structural genomix research consortium]]
-[[Category: nysgrc]]
-[[Category: nysgxrc]]
-[[Category: protein structure initiative]]
-[[Category: psi]]
-[[Category: structural genomic]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:24:29 2008''