2odk: Difference between revisions

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[[Image:2odk.gif|left|200px]]


{{Structure
==Putative prevent-host-death protein from Nitrosomonas europaea==
|PDB= 2odk |SIZE=350|CAPTION= <scene name='initialview01'>2odk</scene>, resolution 1.40&Aring;
<StructureSection load='2odk' size='340' side='right'caption='[[2odk]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
<table><tr><td colspan='2'>[[2odk]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Nitrosomonas_europaea Nitrosomonas europaea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ODK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ODK FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
|GENE= NE2111 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=915 Nitrosomonas europaea])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam02604 PhdYeFM]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2odk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2odk OCA], [https://pdbe.org/2odk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2odk RCSB], [https://www.ebi.ac.uk/pdbsum/2odk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2odk ProSAT], [https://www.topsan.org/Proteins/MCSG/2odk TOPSAN]</span></td></tr>
|RELATEDENTRY=
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2odk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2odk OCA], [http://www.ebi.ac.uk/pdbsum/2odk PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2odk RCSB]</span>
== Function ==
}}
[https://www.uniprot.org/uniprot/Q82T22_NITEU Q82T22_NITEU]
 
== Evolutionary Conservation ==
'''Putative prevent-host-death protein from Nitrosomonas europaea'''
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
 
  <jmolCheckbox>
==About this Structure==
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/od/2odk_consurf.spt"</scriptWhenChecked>
2ODK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Nitrosomonas_europaea Nitrosomonas europaea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ODK OCA].  
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2odk ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Nitrosomonas europaea]]
[[Category: Nitrosomonas europaea]]
[[Category: Single protein]]
[[Category: Edwards A]]
[[Category: Edwards, A.]]
[[Category: Joachimiak A]]
[[Category: Joachimiak, A.]]
[[Category: Kagan O]]
[[Category: Kagan, O.]]
[[Category: Osipiuk J]]
[[Category: MCSG, Midwest Center for Structural Genomics.]]
[[Category: Savchenko A]]
[[Category: Osipiuk, J.]]
[[Category: Skarina T]]
[[Category: Savchenko, A.]]
[[Category: Skarina, T.]]
[[Category: apc7367]]
[[Category: mcsg]]
[[Category: midwest center for structural genomic]]
[[Category: prevent-host-death protein]]
[[Category: protein structure initiative]]
[[Category: psi-2]]
[[Category: structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:16:11 2008''

Latest revision as of 12:46, 25 December 2024

Putative prevent-host-death protein from Nitrosomonas europaeaPutative prevent-host-death protein from Nitrosomonas europaea

Structural highlights

2odk is a 4 chain structure with sequence from Nitrosomonas europaea. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.4Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q82T22_NITEU

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2odk, resolution 1.40Å

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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