2cz5: Difference between revisions

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 ==Crystal structure of orotidine 5'-phosphate decarboxylase from Pyrococcus horikoshii OT3==
-<StructureSection load='2cz5' size='340' side='right' caption='[[2cz5]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
+<StructureSection load='2cz5' size='340' side='right'caption='[[2cz5]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2cz5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CZ5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CZ5 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2cz5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CZ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CZ5 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2czd|2czd]], [[2cze|2cze]], [[2czf|2czf]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pyrF, PH0731 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=53953 'Pyrococcus shinkaii'])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cz5 OCA], [https://pdbe.org/2cz5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cz5 RCSB], [https://www.ebi.ac.uk/pdbsum/2cz5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cz5 ProSAT], [https://www.topsan.org/Proteins/RSGI/2cz5 TOPSAN]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Orotidine-5'-phosphate_decarboxylase Orotidine-5'-phosphate decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.23 4.1.1.23] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cz5 OCA], [http://pdbe.org/2cz5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2cz5 RCSB], [http://www.ebi.ac.uk/pdbsum/2cz5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2cz5 ProSAT], [http://www.topsan.org/Proteins/RSGI/2cz5 TOPSAN]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/PYRF_PYRHO PYRF_PYRHO]] Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP) (By similarity).[HAMAP-Rule:MF_01200_A]
+[https://www.uniprot.org/uniprot/PYRF_PYRHO PYRF_PYRHO] Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP) (By similarity).[HAMAP-Rule:MF_01200_A]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 22: / Line 20: @@
 </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cz5 ConSurf].
 <div style="clear:both"></div>
+==See Also==
+*[[Uridine 5'-monophosphate synthase 3D structures|Uridine 5'-monophosphate synthase 3D structures]]
 __TOC__
 </StructureSection>
-[[Category: Pyrococcus shinkaii]]
+[[Category: Large Structures]]
-[[Category: Orotidine-5'-phosphate decarboxylase]]
+[[Category: Pyrococcus horikoshii]]
-[[Category: Arai, R]]
+[[Category: Arai R]]
-[[Category: Ito, K]]
+[[Category: Ito K]]
-[[Category: Kamo-Uchikubo, T]]
+[[Category: Kamo-Uchikubo T]]
-[[Category: Structural genomic]]
+[[Category: Shirouzu M]]
-[[Category: Shirouzu, M]]
+[[Category: Yokoyama S]]
-[[Category: Yokoyama, S]]
-[[Category: Lyase]]
-[[Category: National project on protein structural and functional analyse]]
-[[Category: Nppsfa]]
-[[Category: Orotidine 5'-phosphate decarboxylase]]
-[[Category: Pyrimidine biosynthesis]]
-[[Category: Rsgi]]