4z0p: Difference between revisions

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 ==Crystal structure of NADPH-dependent glyoxylate/hydroxypyruvate reductase SMc02828 (SmGhrA) from Sinorhizobium meliloti in complex with NADPH and oxalate==
-<StructureSection load='4z0p' size='340' side='right' caption='[[4z0p]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
+<StructureSection load='4z0p' size='340' side='right'caption='[[4z0p]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4z0p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ensifer_meliloti Ensifer meliloti]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Z0P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4Z0P FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4z0p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sinorhizobium_meliloti_1021 Sinorhizobium meliloti 1021]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Z0P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4Z0P FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene>, <scene name='pdbligand=OXD:OXALIC+ACID'>OXD</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4weq|4weq]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene>, <scene name='pdbligand=OXD:OXALIC+ACID'>OXD</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">R00152, SMc02828 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266834 Ensifer meliloti])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4z0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4z0p OCA], [https://pdbe.org/4z0p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4z0p RCSB], [https://www.ebi.ac.uk/pdbsum/4z0p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4z0p ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glyoxylate_reductase_(NADP(+)) Glyoxylate reductase (NADP(+))], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.79 1.1.1.79] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4z0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4z0p OCA], [http://pdbe.org/4z0p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4z0p RCSB], [http://www.ebi.ac.uk/pdbsum/4z0p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4z0p ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q92T34_RHIME Q92T34_RHIME]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 23: / Line 23: @@
 __TOC__
 </StructureSection>
-[[Category: Ensifer meliloti]]
+[[Category: Large Structures]]
-[[Category: Almo, S C]]
+[[Category: Sinorhizobium meliloti 1021]]
-[[Category: Bonanno, J]]
+[[Category: Almo SC]]
-[[Category: Gasiorowska, O A]]
+[[Category: Bonanno J]]
-[[Category: Handing, K B]]
+[[Category: Gasiorowska OA]]
-[[Category: Hillerich, B S]]
+[[Category: Handing KB]]
-[[Category: Minor, W]]
+[[Category: Hillerich BS]]
-[[Category: Structural genomic]]
+[[Category: Minor W]]
-[[Category: Porebski, P J]]
+[[Category: Porebski PJ]]
-[[Category: Shabalin, I G]]
+[[Category: Shabalin IG]]
-[[Category: Sroka, P]]
+[[Category: Sroka P]]
-[[Category: Nadph]]
-[[Category: Nysgrc]]
-[[Category: Oxalate]]
-[[Category: Oxidoreductase]]
-[[Category: Psi-biology]]