1xs4: Difference between revisions

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 ==dCTP deaminase from Escherichia coli- E138A mutant enzyme in complex with dCTP==
-<StructureSection load='1xs4' size='340' side='right' caption='[[1xs4]], [[Resolution|resolution]] 2.53&Aring;' scene=''>
+<StructureSection load='1xs4' size='340' side='right'caption='[[1xs4]], [[Resolution|resolution]] 2.53&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1xs4]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XS4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XS4 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1xs4]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XS4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XS4 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DCP:2-DEOXYCYTIDINE-5-TRIPHOSPHATE'>DCP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.53&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DCP:2-DEOXYCYTIDINE-5-TRIPHOSPHATE'>DCP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1xs1|1xs1]], [[1xs6|1xs6]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xs4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xs4 OCA], [https://pdbe.org/1xs4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xs4 RCSB], [https://www.ebi.ac.uk/pdbsum/1xs4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xs4 ProSAT]</span></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dcd ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/dCTP_deaminase dCTP deaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.4.13 3.5.4.13] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xs4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xs4 OCA], [http://pdbe.org/1xs4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xs4 RCSB], [http://www.ebi.ac.uk/pdbsum/1xs4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xs4 ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/DCD_ECOLI DCD_ECOLI]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 32: / Line 31: @@
 ==See Also==
-*[[Deaminase|Deaminase]]
+*[[Deaminase 3D structures|Deaminase 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Bacillus coli migula 1895]]
+[[Category: Escherichia coli]]
-[[Category: DCTP deaminase]]
+[[Category: Large Structures]]
-[[Category: Bynck, J H]]
+[[Category: Bynck JH]]
-[[Category: Christensen, U]]
+[[Category: Christensen U]]
-[[Category: Fano, M]]
+[[Category: Fano M]]
-[[Category: Johansson, E]]
+[[Category: Johansson E]]
-[[Category: Larsen, S]]
+[[Category: Larsen S]]
-[[Category: Neuhard, J]]
+[[Category: Neuhard J]]
-[[Category: Sigurskjold, B W]]
+[[Category: Sigurskjold BW]]
-[[Category: Willemoes, M]]
+[[Category: Willemoes M]]
-[[Category: Dctp deaminase]]
-[[Category: Hydrolase]]
-[[Category: Nucleotide metabolism]]
-[[Category: Trimer]]