4ryu: Difference between revisions

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 ==Crystal Structure of C2 form of E112A Mutant of Stationary Phase Survival Protein (SurE) from Salmonella typhimurium==
-<StructureSection load='4ryu' size='340' side='right' caption='[[4ryu]], [[Resolution|resolution]] 2.04&Aring;' scene=''>
+<StructureSection load='4ryu' size='340' side='right'caption='[[4ryu]], [[Resolution|resolution]] 2.04&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4ryu]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_enteritidis_str._ec20130345 Salmonella enterica subsp. enterica serovar enteritidis str. ec20130345]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RYU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4RYU FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4ryu]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._EC20130345 Salmonella enterica subsp. enterica serovar Enteritidis str. EC20130345]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RYU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4RYU FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.04&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2v4n|2v4n]], [[2v4o|2v4o]], [[4g9o|4g9o]], [[4gad|4gad]], [[4ryt|4ryt]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AV66_15865, surE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1412588 Salmonella enterica subsp. enterica serovar Enteritidis str. EC20130345])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ryu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ryu OCA], [https://pdbe.org/4ryu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ryu RCSB], [https://www.ebi.ac.uk/pdbsum/4ryu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ryu ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ryu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ryu OCA], [http://pdbe.org/4ryu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ryu RCSB], [http://www.ebi.ac.uk/pdbsum/4ryu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ryu ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/SURE_SALTY SURE_SALTY]] Nucleotidase with a broad substrate specificity as it can dephosphorylate various ribo- and deoxyribonucleoside 5'-monophosphates and ribonucleoside 3'-monophosphates with highest affinity to 3'-AMP. Also hydrolyzes polyphosphate (exopolyphosphatase activity) with the preference for short-chain-length substrates (P20-25). Might be involved in the regulation of dNTP and NTP pools, and in the turnover of 3'-mononucleotides produced by numerous intracellular RNases (T1, T2, and F) during the degradation of various RNAs.[HAMAP-Rule:MF_00060]
+[https://www.uniprot.org/uniprot/SURE_SALTY SURE_SALTY] Nucleotidase with a broad substrate specificity as it can dephosphorylate various ribo- and deoxyribonucleoside 5'-monophosphates and ribonucleoside 3'-monophosphates with highest affinity to 3'-AMP. Also hydrolyzes polyphosphate (exopolyphosphatase activity) with the preference for short-chain-length substrates (P20-25). Might be involved in the regulation of dNTP and NTP pools, and in the turnover of 3'-mononucleotides produced by numerous intracellular RNases (T1, T2, and F) during the degradation of various RNAs.[HAMAP-Rule:MF_00060]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 24: / Line 23: @@
 __TOC__
 </StructureSection>
-[[Category: Salmonella enterica subsp. enterica serovar enteritidis str. ec20130345]]
+[[Category: Large Structures]]
-[[Category: Mathiharan, Y K]]
+[[Category: Salmonella enterica subsp. enterica serovar Enteritidis str. EC20130345]]
-[[Category: Murthy, M R.N]]
+[[Category: Mathiharan YK]]
-[[Category: Domain swapping]]
+[[Category: Murthy MRN]]
-[[Category: Hydrolase]]
-[[Category: Phosphatase]]
-[[Category: Rossmann fold like]]
-[[Category: Stationary phase survival protein]]