1q1b: Difference between revisions

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 ==Crystal structure of E. coli MalK in the nucleotide-free form==
-<StructureSection load='1q1b' size='340' side='right' caption='[[1q1b]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
+<StructureSection load='1q1b' size='340' side='right'caption='[[1q1b]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1q1b]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q1B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Q1B FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1q1b]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q1B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Q1B FirstGlance]. <br>
-</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1q12|1q12]], [[1q1e|1q1e]]</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MALK OR B4035 OR Z5633 OR ECS5018 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1q1b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q1b OCA], [https://pdbe.org/1q1b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1q1b RCSB], [https://www.ebi.ac.uk/pdbsum/1q1b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1q1b ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1q1b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q1b OCA], [http://pdbe.org/1q1b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1q1b RCSB], [http://www.ebi.ac.uk/pdbsum/1q1b PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1q1b ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/MALK_ECOLI MALK_ECOLI]] Part of the ABC transporter complex MalEFGK involved in maltose/maltodextrin import. Responsible for energy coupling to the transport system.
+[https://www.uniprot.org/uniprot/MALK_ECOLI MALK_ECOLI] Part of the ABC transporter complex MalEFGK involved in maltose/maltodextrin import. Responsible for energy coupling to the transport system.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
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 </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1q1b ConSurf].
 <div style="clear:both"></div>
-<div style="background-color:#fffaf0;">
-== Publication Abstract from PubMed ==
-The ATPase components of ATP binding cassette (ABC) transporters power the transporters by binding and hydrolyzing ATP. Major conformational changes of an ATPase are revealed by crystal structures of MalK, the ATPase subunit of the maltose transporter from Escherichia coli, in three different dimeric configurations. While other nucleotide binding domains or subunits display low affinity for each other in the absence of the transmembrane segments, the MalK dimer is stabilized through interactions of the additional C-terminal domains. In the two nucleotide-free structures, the N-terminal nucleotide binding domains are separated to differing degrees, and the dimer is maintained through contacts of the C-terminal regulatory domains. In the ATP-bound form, the nucleotide binding domains make contact and two ATPs lie buried along the dimer interface. The two nucleotide binding domains of the dimer open and close like a pair of tweezers, suggesting a regulatory mechanism for ATPase activity that may be tightly coupled to translocation.
-A tweezers-like motion of the ATP-binding cassette dimer in an ABC transport cycle.,Chen J, Lu G, Lin J, Davidson AL, Quiocho FA Mol Cell. 2003 Sep;12(3):651-61. PMID:14527411<ref>PMID:14527411</ref>
-From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-</div>
-<div class="pdbe-citations 1q1b" style="background-color:#fffaf0;"></div>
-== References ==
-<references/>
 __TOC__
 </StructureSection>
-[[Category: Ecoli]]
+[[Category: Escherichia coli K-12]]
-[[Category: Chen, J]]
+[[Category: Large Structures]]
-[[Category: Davidson, A L]]
+[[Category: Chen J]]
-[[Category: Lin, J]]
+[[Category: Davidson AL]]
-[[Category: Lu, G]]
+[[Category: Lin J]]
-[[Category: Quiocho, F A]]
+[[Category: Lu G]]
-[[Category: Nucleotide-free form]]
+[[Category: Quiocho FA]]
-[[Category: Semi-open dimer]]
-[[Category: Sugar transport]]
-[[Category: Transport protein]]