1gyd: Difference between revisions

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-==structure of Cellvibrio cellulosa alpha-L-arabinanase==
+==Structure of Cellvibrio cellulosa alpha-L-arabinanase==
-<StructureSection load='1gyd' size='340' side='right' caption='[[1gyd]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
+<StructureSection load='1gyd' size='340' side='right'caption='[[1gyd]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1gyd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"cellvibrio_cellulosa"_nagy_et_al._2002 "cellvibrio cellulosa" nagy et al. 2002]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GYD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GYD FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1gyd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cellvibrio_japonicus Cellvibrio japonicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GYD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GYD FirstGlance]. <br>
-</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1gye|1gye]], [[1gyh|1gyh]]</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Arabinan_endo-1,5-alpha-L-arabinosidase Arabinan endo-1,5-alpha-L-arabinosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.99 3.2.1.99] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gyd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gyd OCA], [https://pdbe.org/1gyd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gyd RCSB], [https://www.ebi.ac.uk/pdbsum/1gyd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gyd ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gyd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gyd OCA], [http://pdbe.org/1gyd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1gyd RCSB], [http://www.ebi.ac.uk/pdbsum/1gyd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1gyd ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/ARBA_CELJU ARBA_CELJU] Involved in the degradation of arabinan and is a key enzyme in the complete degradation of the plant cell wall. Catalyzes the cleavage of the terminal alpha-(1->5)-arabinofuranosyl bonds of linear arabinan and carboxymethylarabinan to produce almost exclusively arabinotriose.<ref>PMID:12198486</ref> <ref>PMID:15708971</ref> <ref>PMID:9163351</ref>
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 13: / Line 14: @@
    <jmolCheckbox>
      <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gy/1gyd_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
@@ Line 27: / Line 28: @@
 </div>
 <div class="pdbe-citations 1gyd" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Arabinanase 3D structures|Arabinanase 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Cellvibrio cellulosa nagy et al. 2002]]
+[[Category: Cellvibrio japonicus]]
-[[Category: Arabinan endo-1,5-alpha-L-arabinosidase]]
+[[Category: Large Structures]]
-[[Category: Charnock, S J]]
+[[Category: Charnock SJ]]
-[[Category: Davies, G J]]
+[[Category: Davies GJ]]
-[[Category: Dodson, E J]]
+[[Category: Dodson EJ]]
-[[Category: Gilbert, H J]]
+[[Category: Gilbert HJ]]
-[[Category: McKie, V A]]
+[[Category: McKie VA]]
-[[Category: Nurizzo, D]]
+[[Category: Nurizzo D]]
-[[Category: Roberts, S M]]
+[[Category: Roberts SM]]
-[[Category: Taylor, E J]]
+[[Category: Taylor EJ]]
-[[Category: Turkenburg, J P]]
+[[Category: Turkenburg JP]]
-[[Category: Arabinanase]]
-[[Category: Catalysis]]
-[[Category: Cellvibrio]]
-[[Category: Hydrolase]]
-[[Category: Propeller]]
-[[Category: Pseudomona]]