5o6f: Difference between revisions
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==NMR structure of cold shock protein A from Corynebacterium pseudotuberculosis== | ==NMR structure of cold shock protein A from Corynebacterium pseudotuberculosis== | ||
<StructureSection load='5o6f' size='340' side='right' caption='[[5o6f | <StructureSection load='5o6f' size='340' side='right'caption='[[5o6f]]' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[5o6f]] is a 1 chain structure with sequence from [ | <table><tr><td colspan='2'>[[5o6f]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Corynebacterium_pseudotuberculosis Corynebacterium pseudotuberculosis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5O6F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5O6F FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5o6f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5o6f OCA], [https://pdbe.org/5o6f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5o6f RCSB], [https://www.ebi.ac.uk/pdbsum/5o6f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5o6f ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/D9QDZ8_CORP2 D9QDZ8_CORP2] | |||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Corynebacterium pseudotuberculosis]] | ||
[[Category: Arni | [[Category: Large Structures]] | ||
[[Category: Caruso | [[Category: Arni RK]] | ||
[[Category: Cornelio | [[Category: Caruso IP]] | ||
[[Category: Coronado | [[Category: Cornelio ML]] | ||
[[Category: Dingley | [[Category: Coronado MA]] | ||
[[Category: Eberle | [[Category: Dingley AJ]] | ||
[[Category: Panwalkar | [[Category: Eberle RJ]] | ||
[[Category: Willbold | [[Category: Panwalkar V]] | ||
[[Category: Willbold D]] | |||
Latest revision as of 09:03, 19 June 2024
NMR structure of cold shock protein A from Corynebacterium pseudotuberculosisNMR structure of cold shock protein A from Corynebacterium pseudotuberculosis
Structural highlights
FunctionPublication Abstract from PubMedCold shock proteins (Csps) function to preserve cell viability at low temperatures by binding to nucleic acids and consequently control gene expression. The mesophilic bacterium Corynebacterium pseudotuberculosis is the causative agent of caseous lymphadenitis in animals, and infection to livestock is a considerable economic burden worldwide. In this report, the structure of cold shock protein A from C. pseudotuberculosis (Cp-CspA) and biochemical analysis of its temperature-dependent interaction with a Y-box single-stranded DNA (ssDNA) motif is presented. The Cp-CspA structure contains five beta-strands making up a beta-barrel fold with 11 hydrophobic core residues and two salt bridges that confers it with a melting temperature of ~54 degrees C that is similar to mesophilic Bs-CspB. Chemical shift perturbations analysis revealed that residues in the nucleic acid binding motifs (RNP 1 and 2) and loop 3 are involved in binding to the Y-box fragment either by direct interaction or by conformational rearrangements remote from the binding region. Fluorescence quenching experiments of Cp-CspA showed that the dissociation constants for Y-box ssDNA binding is nanomolar and the binding affinity decreased as the temperature increased, indicating that the interaction is enthalpically driven and the hydrogen bonds and van der Waals forces are important contributions for complex stabilization. The Y31 of Cp-CspA is a particular occurrence among Csps from mesophilic bacteria that provide a possible explanation for the higher binding affinity to ssDNA than that observed for Bs-CspB. Anisotropy measurements indicated that the reduction in molecular mobility of Cp-CspA upon Y-box binding is characterized by a cooperative process. This article is protected by copyright. All rights reserved. Structure and interaction of Corynebacterium pseudotuberculosis cold shock protein A with Y-box single-stranded DNA fragment.,Caruso IP, Panwalkar V, Coronado MA, Dingley AJ, Cornelio ML, Willbold D, Arni RK, Eberle RJ FEBS J. 2017 Dec 2. doi: 10.1111/febs.14350. PMID:29197185[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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